7TVR

Structure of the ribbon isoform of the novel conotoxin PnID derived from Conus pennaceus

  • Classification: TOXIN
  • Organism(s): Conus pennaceus
  • Mutation(s): Yes 

  • Deposited: 2022-02-05 Released: 2023-01-25 
  • Deposition Author(s): Loening, N.M., Espiritu, M.J.
  • Funding Organization(s): National Science Foundation (NSF, United States), Other private, United States Department of Agriculture (USDA), Other government, National Institutes of Health/National Institute on Drug Abuse (NIH/NIDA)

Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Characterization of the Native Disulfide Isomers of the Novel chi-Conotoxin PnID: Implications for Further Increasing Conotoxin Diversity.

Espiritu, M.J.Taylor, J.K.Sugai, C.K.Thapa, P.Loening, N.M.Gusman, E.Baoanan, Z.G.Baumann, M.H.Bingham, J.P.

(2023) Mar Drugs 21

  • DOI: https://doi.org/10.3390/md21020061
  • Primary Citation of Related Structures:  
    7TVQ, 7TVR

  • PubMed Abstract: 

    χ-Conotoxins are known for their ability to selectively inhibit norepinephrine transporters, an ability that makes them potential leads for treating various neurological disorders, including neuropathic pain. PnID, a peptide isolated from the venom of Conus pennaceus , shares high sequence homology with previously characterized χ-conotoxins. Whereas previously reported χ-conotoxins seem to only have a single native disulfide bonding pattern, PnID has three native isomers due to the formation of different disulfide bond patterns during its maturation in the venom duct. In this study, the disulfide connectivity and three-dimensional structure of these disulfide isomers were explored using regioselective synthesis, chromatographic coelution, and solution-state nuclear magnetic resonance spectroscopy. Of the native isomers, only the isomer with a ribbon disulfide configuration showed pharmacological activity similar to other χ-conotoxins. This isomer inhibited the rat norepinephrine transporter (IC 50 = 10 ± 2 µM) and has the most structural similarity to previously characterized χ-conotoxins. In contrast, the globular isoform of PnID showed more than ten times less activity against this transporter and the beaded isoform did not display any measurable biological activity. This study is the first report of the pharmacological and structural characterization of an χ-conotoxin from a species other than Conus marmoreus and is the first report of the existence of natively-formed conotoxin isomers.


  • Organizational Affiliation

    Department of Molecular Biosciences and Bioengineering, College of Tropical Agriculture and Human Resources, University of Hawai'i, Honolulu, HI 96822, USA.


Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Chi-conotoxin-like PnMRCL-01313Conus pennaceusMutation(s): 1 
UniProt
Find proteins for Q9BPE9 (Conus pennaceus)
Explore Q9BPE9 
Go to UniProtKB:  Q9BPE9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BPE9
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation (NSF, United States)United States1917696
Other privateM. J. Murdock Charitable Trust Grant 201811283
United States Department of Agriculture (USDA)United StatesHATCH (HAW00595-R)
United States Department of Agriculture (USDA)United StatesNIFA (#2011-37610-31182)
Other governmentFulbright - Philippine Agriculture Scholarship Program for Advanced Research
National Institutes of Health/National Institute on Drug Abuse (NIH/NIDA)United StatesDA00522

Revision History  (Full details and data files)

  • Version 1.0: 2023-01-25
    Type: Initial release
  • Version 1.1: 2023-03-08
    Changes: Database references