Molecular insights into the HLA-B35 molecules Px and Py group classification associated with HIV control
Lobos, C.A., Chatzileontiadou, D.S.M., Sok, B., Almedia, C., Halim, H., D'Orsogna, L., Gras, S.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
MHC class I antigen | 276 | Homo sapiens | Mutation(s): 0  Gene Names: HLA-B | ||
UniProt | |||||
Find proteins for A0A5H2UI55 (Homo sapiens) Explore A0A5H2UI55  Go to UniProtKB:  A0A5H2UI55 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A5H2UI55 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-2-microglobulin | 99 | Homo sapiens | Mutation(s): 0  Gene Names: B2M, CDABP0092, HDCMA22P | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P61769 (Homo sapiens) Explore P61769  Go to UniProtKB:  P61769 | |||||
PHAROS:  P61769 GTEx:  ENSG00000166710  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P61769 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Reverse transcriptase peptide NPDIVIYQY | 9 | Human immunodeficiency virus 1 | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for P03366 (Human immunodeficiency virus type 1 group M subtype B (isolate BH10)) Explore P03366  Go to UniProtKB:  P03366 | |||||
Entity Groups   | |||||
UniProt Group | P03366 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
BTB Query on BTB | G [auth C] | 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C8 H19 N O5 OWMVSZAMULFTJU-UHFFFAOYSA-N | |||
TRS Query on TRS | F [auth B] | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O | |||
PEG Query on PEG | D [auth A], E [auth B] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 50.875 | α = 90 |
b = 81.904 | β = 90 |
c = 109.32 | γ = 90 |
Software Name | Purpose |
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BUSTER | refinement |
XDS | data reduction |
Aimless | data scaling |
PHASER | phasing |
PDB_EXTRACT | data extraction |
Funding Organization | Location | Grant Number |
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National Health and Medical Research Council (NHMRC, Australia) | Australia | 1159272 |