7R3J

Nativ complex of PqsE and RhlR with the synthetic antagonist mBTL


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.06 Å
  • R-Value Free: 0.289 
  • R-Value Work: 0.269 
  • R-Value Observed: 0.270 

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Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Moonlighting chaperone activity of the enzyme PqsE contributes to RhlR-controlled virulence of Pseudomonas aeruginosa.

Borgert, S.R.Henke, S.Witzgall, F.Schmelz, S.Zur Lage, S.Hotop, S.K.Stephen, S.Lubken, D.Kruger, J.Gomez, N.O.van Ham, M.Jansch, L.Kalesse, M.Pich, A.Bronstrup, M.Haussler, S.Blankenfeldt, W.

(2022) Nat Commun 13: 7402-7402

  • DOI: https://doi.org/10.1038/s41467-022-35030-w
  • Primary Citation of Related Structures:  
    7R3E, 7R3F, 7R3G, 7R3H, 7R3I, 7R3J, 8B4A

  • PubMed Abstract: 

    Pseudomonas aeruginosa is a major cause of nosocomial infections and also leads to severe exacerbations in cystic fibrosis or chronic obstructive pulmonary disease. Three intertwined quorum sensing systems control virulence of P. aeruginosa, with the rhl circuit playing the leading role in late and chronic infections. The majority of traits controlled by rhl transcription factor RhlR depend on PqsE, a dispensable thioesterase in Pseudomonas Quinolone Signal (PQS) biosynthesis that interferes with RhlR through an enigmatic mechanism likely involving direct interaction of both proteins. Here we show that PqsE and RhlR form a 2:2 protein complex that, together with RhlR agonist N-butanoyl-L-homoserine lactone (C4-HSL), solubilizes RhlR and thereby renders the otherwise insoluble transcription factor active. We determine crystal structures of the complex and identify residues essential for the interaction. To corroborate the chaperone-like activity of PqsE, we design stability-optimized variants of RhlR that bypass the need for C4-HSL and PqsE in activating PqsE/RhlR-controlled processes of P. aeruginosa. Together, our data provide insight into the unique regulatory role of PqsE and lay groundwork for developing new P. aeruginosa-specific pharmaceuticals.


  • Organizational Affiliation

    Department Structure and Function of Proteins, Helmholtz Centre for Infection Research, Inhoffenstr. 7, 38124, Braunschweig, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
2-aminobenzoylacetyl-CoA thioesterase
A, B
318Pseudomonas aeruginosa PAO1Mutation(s): 0 
Gene Names: pqsEPA1000
EC: 3.1.2.32
UniProt
Find proteins for P20581 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
Explore P20581 
Go to UniProtKB:  P20581
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP20581
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Regulatory protein RhlR
C, D
241Pseudomonas aeruginosa PAO1Mutation(s): 0 
Gene Names: rhlRlasMvsmRPA3477
UniProt
Find proteins for P54292 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
Explore P54292 
Go to UniProtKB:  P54292
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP54292
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.06 Å
  • R-Value Free: 0.289 
  • R-Value Work: 0.269 
  • R-Value Observed: 0.270 
  • Space Group: I 4 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 159.256α = 90
b = 159.256β = 90
c = 284.1γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
autoPROCdata reduction
STARANISOdata scaling
PDB_EXTRACTdata extraction
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2022-12-14
    Type: Initial release
  • Version 1.1: 2024-01-31
    Changes: Data collection, Refinement description