7QUZ

Crystal structure of the SeMet octameric C-terminal Big_2-CBM56 domains from Paenibacillus illinoisensis (Bacillus circulans IAM1165) beta-1,3-glucanase H

PDB DOI: https://doi.org/10.2210/pdb7QUZ/pdb

Classification: HYDROLASE
Organism(s): Paenibacillus illinoisensis
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-01-19 Released: 2023-02-01
Deposition Author(s): Najmudin, S., Venditto, I., Fontes, C.M.G.A., Bule, P.
Funding Organization(s): Fundacao para a Ciencia e a Tecnologia, European Communitys Seventh Framework Programme

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.16 Å
R-Value Free: 0.292
R-Value Work: 0.240

wwPDB Validation 3D Report Full Report

This is version 2.0 of the entry. See complete history.

Literature

Structural and biochemical characterization of C-terminal Big_2-CBM56 domains of Bacillus circulans IAM1165 beta-1,3-glucanase H and Paenibacillus sp CBM56

Najmudin, S., Venditto, I., Pires, V.R., Caseiro, C., Correia, M.A.S., Romao, M.J., Carvalho, A.L., Fontes, C.M.G.A., Bule, P.

To be published.

Macromolecule Content

Total Structure Weight: 173.55 kDa
Atom Count: 11,629
Modelled Residue Count: 1,477
Deposited Residue Count: 1,656
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Beta-1,3-glucanase bglH	A [auth AAA] B [auth BBB] C [auth CCC] D [auth DDD] E [auth EEE] A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH]	207	Paenibacillus illinoisensis	Mutation(s): 0 Gene Names: bglH, beta-1, 3-glucanase
UniProt
Find proteins for Q45095 (Niallia circulans) Explore Q45095 Go to UniProtKB: Q45095
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q45095
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain AA [auth HHH] SDF format, chain I [auth AAA] SDF format, chain J [auth AAA] SDF format, chain M [auth BBB] SDF format, chain N [auth BBB] SDF format, chain P [auth CCC] SDF format, chain S [auth DDD] SDF format, chain W [auth FFF] MOL2 format, chain AA [auth HHH] MOL2 format, chain I [auth AAA] MOL2 format, chain J [auth AAA] MOL2 format, chain M [auth BBB] MOL2 format, chain N [auth BBB] MOL2 format, chain P [auth CCC] MOL2 format, chain S [auth DDD] MOL2 format, chain W [auth FFF]	AA [auth HHH] I [auth AAA] J [auth AAA] M [auth BBB] N [auth BBB] AA [auth HHH], I [auth AAA], J [auth AAA], M [auth BBB], N [auth BBB], P [auth CCC], S [auth DDD], W [auth FFF]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain AA [auth HHH] Focus chain I [auth AAA] Focus chain J [auth AAA] Focus chain M [auth BBB] Focus chain N [auth BBB] Focus chain P [auth CCC] Focus chain S [auth DDD] Focus chain W [auth FFF] Interactions & Density Focus chain AA [auth HHH] Focus chain I [auth AAA] Focus chain J [auth AAA] Focus chain M [auth BBB] Focus chain N [auth BBB] Focus chain P [auth CCC] Focus chain S [auth DDD] Focus chain W [auth FFF]
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain BA [auth HHH] SDF format, chain K [auth AAA] SDF format, chain L [auth AAA] SDF format, chain O [auth BBB] SDF format, chain Q [auth CCC] SDF format, chain R [auth DDD] SDF format, chain T [auth DDD] SDF format, chain U [auth EEE] SDF format, chain V [auth EEE] SDF format, chain X [auth FFF] SDF format, chain Y [auth GGG] SDF format, chain Z [auth GGG] MOL2 format, chain BA [auth HHH] MOL2 format, chain K [auth AAA] MOL2 format, chain L [auth AAA] MOL2 format, chain O [auth BBB] MOL2 format, chain Q [auth CCC] MOL2 format, chain R [auth DDD] MOL2 format, chain T [auth DDD] MOL2 format, chain U [auth EEE] MOL2 format, chain V [auth EEE] MOL2 format, chain X [auth FFF] MOL2 format, chain Y [auth GGG] MOL2 format, chain Z [auth GGG]	BA [auth HHH] K [auth AAA] L [auth AAA] O [auth BBB] Q [auth CCC] BA [auth HHH], K [auth AAA], L [auth AAA], O [auth BBB], Q [auth CCC], R [auth DDD], T [auth DDD], U [auth EEE], V [auth EEE], X [auth FFF], Y [auth GGG], Z [auth GGG]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain BA [auth HHH] Focus chain K [auth AAA] Focus chain L [auth AAA] Focus chain O [auth BBB] Focus chain Q [auth CCC] Focus chain R [auth DDD] Focus chain T [auth DDD] Focus chain U [auth EEE] Focus chain V [auth EEE] Focus chain X [auth FFF] Focus chain Y [auth GGG] Focus chain Z [auth GGG] Interactions & Density Focus chain BA [auth HHH] Focus chain K [auth AAA] Focus chain L [auth AAA] Focus chain O [auth BBB] Focus chain Q [auth CCC] Focus chain R [auth DDD] Focus chain T [auth DDD] Focus chain U [auth EEE] Focus chain V [auth EEE] Focus chain X [auth FFF] Focus chain Y [auth GGG] Focus chain Z [auth GGG]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A [auth AAA] B [auth BBB] C [auth CCC] D [auth DDD] E [auth EEE] A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH]	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET