7PZE

MademoiseLLE domain 2 of Rrm4 from Ustilago maydis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.225 
  • R-Value Observed: 0.227 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

A MademoiseLLE domain binding platform links the key RNA transporter to endosomes.

Devan, S.K.Schott-Verdugo, S.Muntjes, K.Bismar, L.Reiners, J.Hachani, E.Schmitt, L.Hoppner, A.Smits, S.H.Gohlke, H.Feldbrugge, M.

(2022) PLoS Genet 18: e1010269-e1010269

  • DOI: https://doi.org/10.1371/journal.pgen.1010269
  • Primary Citation of Related Structures:  
    7PZE

  • PubMed Abstract: 

    Spatiotemporal expression can be achieved by transport and translation of mRNAs at defined subcellular sites. An emerging mechanism mediating mRNA trafficking is microtubule-dependent co-transport on shuttling endosomes. Although progress has been made in identifying various components of the endosomal mRNA transport machinery, a mechanistic understanding of how these RNA-binding proteins are connected to endosomes is still lacking. Here, we demonstrate that a flexible MademoiseLLE (MLLE) domain platform within RNA-binding protein Rrm4 of Ustilago maydis is crucial for endosomal attachment. Our structure/function analysis uncovered three MLLE domains at the C-terminus of Rrm4 with a functionally defined hierarchy. MLLE3 recognises two PAM2-like sequences of the adaptor protein Upa1 and is essential for endosomal shuttling of Rrm4. MLLE1 and MLLE2 are most likely accessory domains exhibiting a variable binding mode for interaction with currently unknown partners. Thus, endosomal attachment of the mRNA transporter is orchestrated by a sophisticated MLLE domain binding platform.


  • Organizational Affiliation

    Institute of Microbiology, Heinrich Heine University Düsseldorf, Cluster of Excellence on Plant Sciences, Düsseldorf, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Chromosome 8, whole genome shotgun sequence
A, B
379Ustilago maydisMutation(s): 0 
Gene Names: UMAG_10836
UniProt
Find proteins for A0A0D1DWZ5 (Ustilago maydis (strain 521 / FGSC 9021))
Explore A0A0D1DWZ5 
Go to UniProtKB:  A0A0D1DWZ5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0D1DWZ5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.225 
  • R-Value Observed: 0.227 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 53.455α = 90
b = 53.455β = 90
c = 144.873γ = 90
Software Package:
Software NamePurpose
AutoProcessdata collection
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)Germany417919780

Revision History  (Full details and data files)

  • Version 1.0: 2022-06-15
    Type: Initial release
  • Version 1.1: 2022-12-28
    Changes: Database references
  • Version 1.2: 2024-05-01
    Changes: Data collection, Refinement description