6ZSZ

Crystal structure of the Grindelwald extracellular domain complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.92 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.166 
  • R-Value Observed: 0.170 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Drosophila TNFRs Grindelwald and Wengen bind Eiger with different affinities and promote distinct cellular functions.

Palmerini, V.Monzani, S.Laurichesse, Q.Loudhaief, R.Mari, S.Cecatiello, V.Olieric, V.Pasqualato, S.Colombani, J.Andersen, D.S.Mapelli, M.

(2021) Nat Commun 12: 2070-2070

  • DOI: https://doi.org/10.1038/s41467-021-22080-9
  • Primary Citation of Related Structures:  
    6ZSY, 6ZSZ, 6ZT0

  • PubMed Abstract: 

    The Drosophila tumour necrosis factor (TNF) ligand-receptor system consists of a unique ligand, Eiger (Egr), and two receptors, Grindelwald (Grnd) and Wengen (Wgn), and therefore provides a simple system for exploring the interplay between ligand and receptors, and the requirement for Grnd and Wgn in TNF/Egr-mediated processes. Here, we report the crystallographic structure of the extracellular domain (ECD) of Grnd in complex with Egr, a high-affinity hetero-hexameric assembly reminiscent of human TNF:TNFR complexes. We show that ectopic expression of Egr results in internalisation of Egr:Grnd complexes in vesicles, a step preceding and strictly required for Egr-induced apoptosis. We further demonstrate that Wgn binds Egr with much reduced affinity and is localised in intracellular vesicles that are distinct from those containing Egr:Grnd complexes. Altogether, our data provide insight into ligand-mediated activation of Grnd and suggest that distinct affinities of TNF ligands for their receptors promote different and non-redundant cellular functions.


  • Organizational Affiliation

    IEO, European Institute of Oncology IRCCS, Milan, Italy.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein grindelwald52Drosophila melanogasterMutation(s): 0 
Gene Names: grndCG10176
UniProt
Find proteins for Q9VJ83 (Drosophila melanogaster)
Explore Q9VJ83 
Go to UniProtKB:  Q9VJ83
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9VJ83
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.92 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.166 
  • R-Value Observed: 0.170 
  • Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 31.45α = 90
b = 31.45β = 90
c = 97.75γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
xia2data reduction
XDSdata reduction
AutoSolphasing
Cootmodel building
Aimlessdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-03-31
    Type: Initial release
  • Version 1.1: 2021-10-13
    Changes: Data collection, Database references