6Z98

NMR solution structure of the peach allergen Pru p 1.0101


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 40 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure and Zeatin Binding of the Peach Allergen Pru p 1 .

Eidelpes, R.Hofer, F.Rock, M.Fuhrer, S.Kamenik, A.S.Liedl, K.R.Tollinger, M.

(2021) J Agric Food Chem 69: 8120-8129

  • DOI: https://doi.org/10.1021/acs.jafc.1c01876
  • Primary Citation of Related Structures:  
    6Z98

  • PubMed Abstract: 

    Peach ( Prunus persica ) is among the fruits most frequently reported to cause food allergies. Allergic reactions commonly result from previous sensitization to the birch pollen allergen Bet v 1, followed by immunological cross-reactivity of IgE antibodies to structurally related proteins in peach. In this study, we present the three-dimensional NMR solution structure of the cross-reactive peach allergen Pru p 1 (isoform Pru p 1.0101). This 17.5 kDa protein adopts the canonical Bet v 1 fold, composed of a seven-stranded β-sheet and three α-helices enclosing an internal cavity. In Pru p 1 , the inner surface of the cavity contains an array of hydroxyl-bearing amino acids surrounded by a hydrophobic patch, constituting a docking site for amphiphilic molecules. NMR-guided docking of the cytokinin molecule zeatin to the internal cavity of Pru p 1 provides a structure-based rationale for the effect that zeatin binding has on the protein's RNase activity.


  • Organizational Affiliation

    Institute of Organic Chemistry, Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innrain 80/82, A-6020 Innsbruck, Austria.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Major allergen Pru p 1159Prunus persicaMutation(s): 0 
Gene Names: ypr-10PR10PRUPE_1G128700PRUPE_ppa012651mg
UniProt
Find proteins for Q2I6V8 (Prunus persica)
Explore Q2I6V8 
Go to UniProtKB:  Q2I6V8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ2I6V8
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 40 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Austrian Science FundAustriaP26849
Austrian Research Promotion AgencyAustria858017

Revision History  (Full details and data files)

  • Version 1.0: 2021-06-30
    Type: Initial release
  • Version 1.1: 2021-08-04
    Changes: Database references