Structure of metallo-beta-lactamase VIM-2 in complex with the imine and enamine form of hydrolysed Biapenem
Lucic, A., Saward, B.G., Brem, J., McDonough, M.A., Calvopina, K., Schofield, C.J.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Metallo-beta-lactamase VIM-2 | 232 | Pseudomonas aeruginosa | Mutation(s): 0  Gene Names: blaVIM-2 | ||
UniProt | |||||
Find proteins for D1MEN9 (Pseudomonas aeruginosa) Explore D1MEN9  Go to UniProtKB:  D1MEN9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | D1MEN9 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
OEQ (Subject of Investigation/LOI) Query on OEQ | C [auth A] | Biapenem Enamine hydrolysis product C15 H21 N4 O5 S NNMZLHRXLIBHJJ-YJFSRANCSA-O | |||
OEN (Subject of Investigation/LOI) Query on OEN | B [auth A] | Biapenem Imine hydrolysis product C15 H21 N4 O5 S FWQUIKBOZBJCAG-PAMYDDKSSA-O | |||
ZN Query on ZN | D [auth A], E [auth A], F [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
CL Query on CL | G [auth A], H [auth A], I [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 64.324 | α = 90 |
b = 74.02 | β = 90 |
c = 78.354 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
PHASER | phasing |
PDB_EXTRACT | data extraction |
XDS | data reduction |
XDS | data scaling |
Funding Organization | Location | Grant Number |
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Medical Research Council (MRC, United Kingdom) | United Kingdom | -- |