6XZ5

RovC - regulator of virulence interconnected with the Csr system


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.229 
  • R-Value Observed: 0.231 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

RovC - a novel type of hexameric transcriptional activator promoting type VI secretion gene expression.

Knittel, V.Sadana, P.Seekircher, S.Stolle, A.S.Korner, B.Volk, M.Jeffries, C.M.Svergun, D.I.Heroven, A.K.Scrima, A.Dersch, P.

(2020) PLoS Pathog 16: e1008552-e1008552

  • DOI: https://doi.org/10.1371/journal.ppat.1008552
  • Primary Citation of Related Structures:  
    6XZ5

  • PubMed Abstract: 

    Type VI secretion systems (T6SSs) are complex macromolecular injection machines which are widespread in Gram-negative bacteria. They are involved in host-cell interactions and pathogenesis, required to eliminate competing bacteria, or are important for the adaptation to environmental stress conditions. Here we identified regulatory elements controlling the T6SS4 of Yersinia pseudotuberculosis and found a novel type of hexameric transcription factor, RovC. RovC directly interacts with the T6SS4 promoter region and activates T6SS4 transcription alone or in cooperation with the LysR-type regulator RovM. A higher complexity of regulation was achieved by the nutrient-responsive global regulator CsrA, which controls rovC expression on the transcriptional and post-transcriptional level. In summary, our work unveils a central mechanism in which RovC, a novel key activator, orchestrates the expression of the T6SS weapons together with a global regulator to deploy the system in response to the availability of nutrients in the species' native environment.


  • Organizational Affiliation

    Department of Molecular Infection Biology, Helmholtz Centre for Infection Research, Braunschweig, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Uncharacterized protein,RovC,Uncharacterized protein252Yersinia pseudotuberculosis YPIIIMutation(s): 0 
Gene Names: YPK_3567
UniProt
Find proteins for A0A0H3B5N9 (Yersinia pseudotuberculosis serotype O:3 (strain YPIII))
Explore A0A0H3B5N9 
Go to UniProtKB:  A0A0H3B5N9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0H3B5N9
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.229 
  • R-Value Observed: 0.231 
  • Space Group: P 3 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 97.278α = 90
b = 97.278β = 90
c = 46.041γ = 120
Software Package:
Software NamePurpose
Aimlessdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2020-09-16
    Type: Initial release
  • Version 1.1: 2020-10-07
    Changes: Database references