6XRI

MSMEG_2027 domain-swapped dimer

PDB DOI: https://doi.org/10.2210/pdb6XRI/pdb

Classification: OXIDOREDUCTASE
Organism(s): Mycolicibacterium smegmatis MC2 155
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2020-07-13 Released: 2021-07-21
Deposition Author(s): Jackson, C.J., Antoney, J.P., Ahmed, F.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.37 Å
R-Value Free: 0.301
R-Value Work: 0.242
R-Value Observed: 0.249

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure of F420-H2 dependent oxidoreductase MSMEG_2027 in dimeric apo form.

Jackson, C.J., Antoney, J.P.

To be published.

Macromolecule Content

Total Structure Weight: 224.39 kDa
Atom Count: 15,752
Modelled Residue Count: 1,876
Deposited Residue Count: 1,960
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	140	Mycolicibacterium smegmatis MC2 155	Mutation(s): 0 Gene Names: MSMEG_2027
UniProt
Find proteins for A0QU01 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)) Explore A0QU01 Go to UniProtKB: A0QU01
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0QU01
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.37 Å
R-Value Free: 0.301
R-Value Work: 0.242
R-Value Observed: 0.249
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.554	α = 90
b = 110.228	β = 105.213
c = 140.15	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2021-07-21

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2021-07-21
Type: Initial release
Version 1.1: 2023-10-18
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.