6XGC

CryoEM structure of influenza hemagglutinin A/Michigan/45/2015 in complex with cyno antibody 1C4


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Broad neutralization of H1 and H3 viruses by adjuvanted influenza HA stem vaccines in nonhuman primates.

Darricarrere, N.Qiu, Y.Kanekiyo, M.Creanga, A.Gillespie, R.A.Moin, S.M.Saleh, J.Sancho, J.Chou, T.H.Zhou, Y.Zhang, R.Dai, S.Moody, A.Saunders, K.O.Crank, M.C.Mascola, J.R.Graham, B.S.Wei, C.J.Nabel, G.J.

(2021) Sci Transl Med 13

  • DOI: https://doi.org/10.1126/scitranslmed.abe5449
  • Primary Citation of Related Structures:  
    6WZT, 6XGC

  • PubMed Abstract: 

    Seasonal influenza vaccines confer protection against specific viral strains but have restricted breadth that limits their protective efficacy. The H1 and H3 subtypes of influenza A virus cause most of the seasonal epidemics observed in humans and are the major drivers of influenza A virus-associated mortality. The consequences of pandemic spread of COVID-19 underscore the public health importance of prospective vaccine development. Here, we show that headless hemagglutinin (HA) stabilized-stem immunogens presented on ferritin nanoparticles elicit broadly neutralizing antibody (bnAb) responses to diverse H1 and H3 viruses in nonhuman primates (NHPs) when delivered with a squalene-based oil-in-water emulsion adjuvant, AF03. The neutralization potency and breadth of antibodies isolated from NHPs were comparable to human bnAbs and extended to mismatched heterosubtypic influenza viruses. Although NHPs lack the immunoglobulin germline VH1-69 residues associated with the most prevalent human stem-directed bnAbs, other gene families compensated to generate bnAbs. Isolation and structural analyses of vaccine-induced bnAbs revealed extensive interaction with the fusion peptide on the HA stem, which is essential for viral entry. Antibodies elicited by these headless HA stabilized-stem vaccines neutralized diverse H1 and H3 influenza viruses and shared a mode of recognition analogous to human bnAbs, suggesting that these vaccines have the potential to confer broadly protective immunity against diverse viruses responsible for seasonal and pandemic influenza infections in humans.


  • Organizational Affiliation

    Sanofi, 640 Memorial Drive, Cambridge, MA 02139, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Hemagglutinin HA1 chainA,
E [auth C],
I [auth E]
327Influenza A virus (A/Michigan/45/2015(H1N1))Mutation(s): 0 
Gene Names: HA
UniProt
Find proteins for A0A1J0CXU0 (Influenza A virus)
Explore A0A1J0CXU0 
Go to UniProtKB:  A0A1J0CXU0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1J0CXU0
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Hemagglutinin HA2 chainB,
F [auth D],
J [auth F]
220Influenza A virus (A/Michigan/45/2015(H1N1))Mutation(s): 0 
Gene Names: HA
UniProt
Find proteins for A0A109YUH3 (Influenza A virus)
Explore A0A109YUH3 
Go to UniProtKB:  A0A109YUH3
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UniProt GroupA0A109YUH3
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
1C4 Fab heavy chainC [auth M],
G [auth H],
K [auth I]
244Macaca fascicularisMutation(s): 0 
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
1C4 Fab light chainD [auth N],
H [auth L],
L [auth J]
216Macaca fascicularisMutation(s): 0 
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  • Reference Sequence
Oligosaccharides

Help

Entity ID: 5
MoleculeChains Length2D Diagram Glycosylation3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranoseM [auth G],
N [auth K],
O
2N-Glycosylation
Glycosylation Resources
GlyTouCan:  G42666HT
GlyCosmos:  G42666HT
GlyGen:  G42666HT
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NAG
Query on NAG

Download Ideal Coordinates CCD File 
AA [auth E]
BA [auth E]
CA [auth E]
DA [auth F]
P [auth A]
AA [auth E],
BA [auth E],
CA [auth E],
DA [auth F],
P [auth A],
Q [auth A],
R [auth A],
S [auth A],
T [auth B],
U [auth C],
V [auth C],
W [auth C],
X [auth C],
Y [auth D],
Z [auth E]
2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-03-10
    Type: Initial release
  • Version 1.1: 2021-03-17
    Changes: Database references