Structure of a novel antithrombotic agent Agkisacucetin in complex with the platelet glycoprotein Ib receptor
Wang, J., Gao, Y.X., Ke, J.Y., Zhu, Z.L., Niu, L.W.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Platelet glycoprotein Ib alpha chain | A [auth G] | 305 | Homo sapiens | Mutation(s): 0  Gene Names: GP1BA | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P07359 (Homo sapiens) Explore P07359  Go to UniProtKB:  P07359 | |||||
PHAROS:  P07359 GTEx:  ENSG00000185245  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P07359 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Snaclec agglucetin subunit alpha-1 | B [auth A] | 154 | Deinagkistrodon acutus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for Q8JIV9 (Deinagkistrodon acutus) Explore Q8JIV9  Go to UniProtKB:  Q8JIV9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8JIV9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Snaclec agglucetin subunit beta-2 | C [auth B] | 149 | Deinagkistrodon acutus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for Q8AYA3 (Deinagkistrodon acutus) Explore Q8AYA3  Go to UniProtKB:  Q8AYA3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8AYA3 | ||||
Sequence AnnotationsExpand | |||||
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Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 86.304 | α = 90 |
b = 86.304 | β = 90 |
c = 189.963 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
XDS | data reduction |
Aimless | data scaling |
PHASER | phasing |
PDB_EXTRACT | data extraction |
Funding Organization | Location | Grant Number |
---|---|---|
National Natural Science Foundation of China (NSFC) | China | U1632124 |