Download MendeleyStructural basis of seamless excision and specific targeting by piggyBac transposase
Chen, Q., Luo, W., Veach, R.A., Hickman, A.B., Wilson, M.H., Dyda, F.(2020) Nat Commun 11: 3446-3446
6X67
Cryo-EM structure of piggyBac transposase strand transfer complex (STC)
- PDB DOI: https://doi.org/10.2210/pdb6X67/pdb
- NAKB: 6X67
- EM Map EMD-22072: EMDB EMDataResource
- Classification: DNA BINDING PROTEIN/DNA
- Organism(s): Trichoplusia ni
- Expression System: Homo sapiens
- Mutation(s): Yes
- Deposited: 2020-05-27 Released: 2020-07-22
- Funding Organization(s): National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.47 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Transposase | A [auth C], B [auth D] | 594 | Trichoplusia ni | Mutation(s): 1 |  |
UniProt | |||||
Find proteins for Q283G1 (Trichoplusia ni) Explore Q283G1 Go to UniProtKB: Q283G1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q283G1 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (37-MER) | C [auth E], F [auth J] | 37 | Trichoplusia ni |  | |
Sequence AnnotationsExpand | |||||
| |||||
Find similar nucleic acids by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (47-MER) | D [auth F], G [auth K] | 47 | Trichoplusia ni |  | |
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (tDNA) | E [auth G], H [auth L] | 8 | Trichoplusia ni |  | |
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | I [auth C], J [auth C], M [auth D], N [auth D] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| CA Query on CA | K [auth C], L [auth C], O [auth D], P [auth D] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.47 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| RECONSTRUCTION | RELION | 3.0 |
| MODEL REFINEMENT | Rosetta |
Entry History & Funding Information
Deposition Data
- Released Date: 2020-07-22 Deposition Author(s): Chen, Q., Hickman, A.B., Dyda, F.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK) | United States | DK093660 |
Revision History (Full details and data files)
- Version 1.0: 2020-07-22
Type: Initial release - Version 1.1: 2024-03-06
Changes: Data collection, Database references, Derived calculations
