6U42

Natively decorated ciliary doublet microtubule

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history. 


Literature

Structure of the Decorated Ciliary Doublet Microtubule.

Ma, M., Stoyanova, M., Rademacher, G., Dutcher, S.K., Brown, A., Zhang, R.

(2019) Cell 179: 909-922.e12

  • DOI: https://doi.org/10.1016/j.cell.2019.09.030
  • Primary Citation of Related Structures:  
    6U42

  • PubMed Abstract: 

    The axoneme of motile cilia is the largest macromolecular machine of eukaryotic cells. In humans, impaired axoneme function causes a range of ciliopathies. Axoneme assembly, structure, and motility require a radially arranged set of doublet microtubules, each decorated in repeating patterns with non-tubulin components. We use single-particle cryo-electron microscopy to visualize and build an atomic model of the repeating structure of a native axonemal doublet microtubule, which reveals the identities, positions, repeat lengths, and interactions of 38 associated proteins, including 33 microtubule inner proteins (MIPs). The structure demonstrates how these proteins establish the unique architecture of doublet microtubules, maintain coherent periodicities along the axoneme, and stabilize the microtubules against the repeated mechanical stress induced by ciliary motility. Our work elucidates the architectural principles that underpin the assembly of this large, repetitive eukaryotic structure and provides a molecular basis for understanding the etiology of human ciliopathies.

    • Organizational Affiliation: 

    Department of Biochemistry and Molecular Biophysics, Washington University in St. Louis, School of Medicine, St. Louis, MO, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Tubulin beta
A [auth 1],
AE [auth N0],
AF [auth Q0],
AG [auth S8],
AI [auth Y4],
AJ [auth 0M],
AM [auth 3S],
BA [auth C0],
BB [auth E8],
BC [auth H6],
BD [auth K4],
BH [auth V8],
BK [auth 1Q],
BL [auth 2S],
C [auth 3],
CE [auth N2],
CF [auth Q2],
CG [auth T0],
CI [auth Y6],
CJ [auth 0O],
DA [auth C2],
DB [auth F0],
DC [auth H8],
DD [auth K6],
DH [auth W0],
DI [auth Y8],
DK [auth 1S],
DL [auth 2U],
E [auth 5],
EA [auth C4],
EF [auth Q4],
EG [auth T2],
EJ [auth 0Q],
FB [auth F2],
FC [auth I0],
FD [auth K8],
FE [auth N6],
FH [auth W2],
FI [auth Z0],
FK [auth 1U],
FL [auth 2W],
G [auth 7],
GA [auth C6],
GF [auth Q6],
GG [auth T4],
GJ [auth 0S],
HC [auth I2],
HD [auth L0],
HE [auth N8],
HF [auth Q8],
HH [auth W4],
HI [auth Z2],
HJ [auth 0U],
HK [auth 1W],
HL [auth 2Y],
I [auth 9],
IA [auth C8],
IB [auth F6],
IG [auth T6],
JC [auth I4],
JD [auth L2],
JE [auth O0],
JF [auth R0],
JH [auth W6],
JI [auth Z4],
JJ [auth 0W],
JL [auth 3A],
K [auth A1],
KA [auth D0],
KB [auth F8],
KG [auth T8],
KK [auth 2A],
LD [auth L4],
LE [auth O2],
LF [auth R2],
LH [auth W8],
LI [auth Z6],
LJ [auth 0Y],
LL [auth 3C],
M [auth A3],
MA [auth D2],
MB [auth G0],
MC [auth I8],
MG [auth U2],
MK [auth 2C],
ND [auth L6],
NE [auth O4],
NF [auth R4],
NH [auth X0],
NI [auth Z8],
NJ [auth 1A],
O [auth A5],
OA [auth D4],
OB [auth G2],
OC [auth J0],
OG [auth U4],
OH [auth X2],
OK [auth 2E],
OL [auth 3G],
P [auth A7],
PE [auth O6],
PF [auth R6],
PI [auth 0A],
PJ [auth 1C],
QA [auth D6],
QB [auth G4],
QC [auth J2],
QD [auth M0],
QG [auth U6],
QH [auth X4],
QK [auth 2G],
QL [auth 3I],
R [auth A9],
RE [auth O8],
RF [auth R8],
RI [auth 0C],
RJ [auth 1E],
SA [auth D8],
SB [auth G6],
SC [auth J4],
SD [auth M2],
SG [auth U8],
SH [auth X6],
SI [auth 0E],
SK [auth 2I],
SL [auth 3K],
T [auth B1],
TA [auth E0],
TF [auth S0],
TJ [auth 1G],
UB [auth G8],
UC [auth J6],
UD [auth M4],
UE [auth P4],
UG [auth V0],
UH [auth X8],
UI [auth 0G],
UK [auth 2K],
UL [auth 3M],
V [auth B3],
VA [auth E2],
VF [auth S2],
VJ [auth 1K],
WC [auth J8],
WD [auth M6],
WE [auth P6],
WF [auth S4],
WG [auth V2],
WH [auth Y0],
WI [auth 0I],
WK [auth 2M],
WL [auth 3O],
X [auth B5],
XA [auth E4],
XB [auth H2],
XJ [auth 1M],
YC [auth K0],
YD [auth M8],
YE [auth P8],
YF [auth S6],
YG [auth V4],
YH [auth Y2],
YI [auth 0K],
YL [auth 3Q],
Z [auth B8],
ZA [auth E6],
ZB [auth H4],
ZG [auth V6],
ZJ [auth 1O],
ZK [auth 2Q]
443Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Tubulin alpha
AA [auth B9],
AB [auth E7],
AC [auth H5],
AD [auth K3],
AH [auth V7],
AK [auth 1P],
AL [auth 2R],
B [auth 2],
BE [auth N1],
BF [auth Q1],
BG [auth S9],
BI [auth Y5],
BJ [auth 0N],
BM [auth 3T],
CA [auth C1],
CB [auth E9],
CC [auth H7],
CD [auth K5],
CH [auth V9],
CK [auth 1R],
CL [auth 2T],
D [auth 4],
DE [auth N3],
DF [auth Q3],
DG [auth T1],
DJ [auth 0P],
EB [auth F1],
EC [auth H9],
ED [auth K7],
EE [auth N5],
EH [auth W1],
EI [auth Y9],
EK [auth 1T],
EL [auth 2V],
F [auth 6],
FA [auth C5],
FF [auth Q5],
FG [auth T3],
FJ [auth 0R],
GB [auth F3],
GC [auth I1],
GD [auth K9],
GE [auth N7],
GH [auth W3],
GI [auth Z1],
GK [auth 1V],
GL [auth 2X],
H [auth 8],
HA [auth C7],
HB [auth F5],
HG [auth T5],
IC [auth I3],
ID [auth L1],
IE [auth N9],
IF [auth Q9],
IH [auth W5],
II [auth Z3],
IJ [auth 0V],
IK [auth 1X],
IL [auth 2Z],
J [auth A0],
JA [auth C9],
JB [auth F7],
JG [auth T7],
JK [auth 1Z],
KC [auth I5],
KD [auth L3],
KE [auth O1],
KF [auth R1],
KH [auth W7],
KI [auth Z5],
KJ [auth 0X],
KL [auth 3B],
L [auth A2],
LA [auth D1],
LB [auth F9],
LC [auth I7],
LG [auth U1],
LK [auth 2B],
MD [auth L5],
ME [auth O3],
MF [auth R3],
MH [auth W9],
MI [auth Z7],
MJ [auth 0Z],
ML [auth 3D],
N [auth A4],
NA [auth D3],
NB [auth G1],
NC [auth I9],
NG [auth U3],
NK [auth 2D],
NL [auth 3F],
OD [auth L7],
OE [auth O5],
OF [auth R5],
OI [auth Z9],
OJ [auth 1B],
PA [auth D5],
PB [auth G3],
PC [auth J1],
PD [auth L9],
PG [auth U5],
PH [auth X3],
PK [auth 2F],
PL [auth 3H],
Q [auth A8],
QE [auth O7],
QF [auth R7],
QI [auth 0B],
QJ [auth 1D],
RA [auth D7],
RB [auth G5],
RC [auth J3],
RD [auth M1],
RG [auth U7],
RH [auth X5],
RK [auth 2H],
RL [auth 3J],
S [auth B0],
SE [auth O9],
SF [auth R9],
SJ [auth 1F],
TB [auth G7],
TC [auth J5],
TD [auth M3],
TE [auth P3],
TG [auth U9],
TH [auth X7],
TI [auth 0F],
TK [auth 2J],
TL [auth 3L],
U [auth B2],
UA [auth E1],
UF [auth S1],
UJ [auth 1H],
VB [auth G9],
VC [auth J7],
VD [auth M5],
VE [auth P5],
VG [auth V1],
VH [auth X9],
VI [auth 0H],
VK [auth 2L],
VL [auth 3N],
W [auth B4],
WA [auth E3],
WB [auth H1],
WJ [auth 1L],
XC [auth J9],
XD [auth M7],
XE [auth P7],
XF [auth S5],
XG [auth V3],
XH [auth Y1],
XI [auth 0J],
XK [auth 2N],
XL [auth 3P],
Y [auth B7],
YA [auth E5],
YB [auth H3],
YJ [auth 1N],
YK [auth 2P],
ZC [auth K1],
ZD [auth M9],
ZE [auth P9],
ZF [auth S7],
ZH [auth Y3],
ZI [auth 0L],
ZL [auth 3R]
451Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
PACRG307Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
FAP20190Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
FAP53RM [auth 4L],
SM [auth 4M]		482Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
FAP127TM [auth 4N],
UM [auth 4O],
VM [auth 4P]		505Chlamydomonas reinhardtiiMutation(s): 0 
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Find proteins for A0A2K3CRG7 (Chlamydomonas reinhardtii)
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
RIB43aAN [auth 4U],
WM [auth 4Q],
XM [auth 4R],
YM [auth 4S],
ZM [auth 4T]		367Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
FAP112BN [auth 4V],
CN [auth 4W],
DN [auth 4X]		475Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
FAP210EN [auth 4Y],
FN [auth 4Z]		462Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
FAP45GN [auth 5A],
HN [auth 5B],
IN [auth 5C],
JN [auth 5D]		501Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
RIB30KN [auth 5E]274Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
FAP363GP [auth 7B],
LN [auth 5F],
MN [auth 5G]		391Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
FAP126NN [auth 5H],
ON [auth 5I],
PN [auth 5J],
QN [auth 5K]		137Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
FAP52RN [auth 5L],
SN [auth 5M],
TN [auth 5N]		633Chlamydomonas reinhardtiiMutation(s): 0 
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Find proteins for A0A2K3D260 (Chlamydomonas reinhardtii)
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
FAP67UN [auth 5O],
VN [auth 5P]		380Chlamydomonas reinhardtiiMutation(s): 0 
EC: 2.7.4.6
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
FAP85WN [auth 5Q]197Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
FAP106AO [auth 5U],
BO [auth 5V],
XN [auth 5R],
YN [auth 5S],
ZN [auth 5T]		240Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
FAP115230Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
FAP143JO [auth 6E]268Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
FAP161KO [auth 6F]403Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
FAP166LO [auth 6G],
MO [auth 6H]		214Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
FAP252352Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
FAP276VO [auth 6Q],
WO [auth 6R],
XO [auth 6S]		87Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
RIB72635Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
FAP141HP [auth 7C]111Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
FAP222IP [auth 7D],
JP [auth 7E],
KP [auth 7F]		146Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
FAP95LP [auth 7G]235Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
FAP182CQ [auth 7X],
MP [auth 7H]		471Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8JHR6 (Chlamydomonas reinhardtii)
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8JHR6
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
FAP129NP [auth 7I],
OP [auth 7J]		483Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3DZI2 (Chlamydomonas reinhardtii)
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3DZI2
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
FAP21PP [auth 7K],
QP [auth 7L]		458Chlamydomonas reinhardtiiMutation(s): 0 
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
FAP273RP [auth 7M],
SP [auth 7N]		139Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8IXN7 (Chlamydomonas reinhardtii)
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8IXN7
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
FAP107TP [auth 7O],
UP [auth 7P]		238Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8JC52 (Chlamydomonas reinhardtii)
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8JC52
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
RIB21VP [auth 7Q]189Chlamydomonas reinhardtiiMutation(s): 0 
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3D7C7
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
DC1WP [auth 7R],
XP [auth 7S]		749Chlamydomonas reinhardtiiMutation(s): 0 
EC: 2.7.1
UniProt
Find proteins for A8IPZ5 (Chlamydomonas reinhardtii)
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8IPZ5
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
DC2YP [auth 7T],
ZP [auth 7U]		552Chlamydomonas reinhardtiiMutation(s): 0 
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
DC3AQ [auth 7V],
BQ [auth 7W]		184Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q7Y0H2 (Chlamydomonas reinhardtii)
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7Y0H2
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
FAP68DQ [auth 7Y]312Chlamydomonas reinhardtiiMutation(s): 0 
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Find proteins for A8HPK6 (Chlamydomonas reinhardtii)
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8HPK6
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
FAP90EQ [auth 7Z],
FQ [auth 8A],
GQ [auth 8B],
HQ [auth 8C],
IQ [auth 8D]		242Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8ICC1
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Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
GTP
Query on GTP
Download Ideal Coordinates CCD File 
AAA [auth R2]
AHA [auth 1T]
AIA [auth 2L]
AJA [auth 3D]
AZ [auth P4]
AAA [auth R2],
AHA [auth 1T],
AIA [auth 2L],
AJA [auth 3D],
AZ [auth P4],
BFA [auth 0I],
BU [auth G1],
BY [auth N3],
CBA [auth T2],
CCA [auth V2],
CDA [auth X0],
CEA [auth Z0],
CR [auth A4],
CS [auth C5],
CT [auth E4],
CV [auth I0],
CW [auth J8],
CX [auth L6],
DAA [auth R4],
DGA [auth 1C],
DIA [auth 2N],
DJA [auth 3G],
DY [auth N6],
DZ [auth P6],
EEA [auth Z2],
EFA [auth 0K],
EHA [auth 1W],
EV [auth I1],
EX [auth L7],
FAA [auth R6],
FBA [auth T4],
FCA [auth V3],
FGA [auth 1D],
FT [auth E6],
FU [auth G4],
FW [auth K0],
GDA [auth X4],
GHA [auth 1X],
GIA [auth 2Q],
GJA [auth 3I],
GS [auth C8],
HEA [auth Z3],
HFA [auth 0M],
HR [auth A9],
HU [auth G5],
HW [auth K1],
HX [auth M0],
HY [auth N8],
HZ [auth P8],
IBA [auth T6],
IJA [auth 3K],
IS [auth C9],
IT [auth E8],
IV [auth I4],
JAA [auth R8],
JDA [auth X6],
JGA [auth 1G],
JHA [auth 2A],
JIA [auth 2S],
JR [auth B0],
JY [auth O0],
JZ [auth P9],
KCA [auth V8],
KFA [auth 0O],
KU [auth G7],
KV [auth I5],
KW [auth K4],
KX [auth M2],
LBA [auth T8],
LDA [auth X7],
LEA [auth Z6],
LGA [auth 1H],
LQ [auth 3],
LS [auth D1],
LT [auth F0],
MAA [auth S0],
MHA [auth 2C],
MIA [auth 2U],
MJA [auth 3M],
MR [auth B2],
NCA [auth W0],
NEA [auth Z7],
NFA [auth 0Q],
NQ [auth 4],
NT [auth F1],
NU [auth G9],
NV [auth I8],
NW [auth K6],
NX [auth M4],
NY [auth O2],
NZ [auth Q2],
OBA [auth U2],
OGA [auth 1L],
OS [auth D3],
PAA [auth S2],
PCA [auth W2],
PDA [auth Y0],
PHA [auth 2E],
PIA [auth 2W],
PJA [auth 3O],
PU [auth H2],
PW [auth K7],
QEA [auth 0A],
QFA [auth 0S],
QR [auth B5],
QT [auth F3],
QV [auth J0],
QX [auth M6],
QY [auth O4],
QZ [auth Q4],
RBA [auth U4],
RDA [auth Y1],
RGA [auth 1N],
RJA [auth 3P],
RQ [auth 7],
RS [auth D5],
SAA [auth S5],
SHA [auth 2G],
SIA [auth 2Y],
SR [auth B7],
ST [auth F5],
SU [auth H3],
SW [auth K9],
SX [auth M7],
TCA [auth W4],
TFA [auth 0V],
TQ [auth 8],
TV [auth J2],
TY [auth O6],
TZ [auth Q6],
UBA [auth U6],
UEA [auth 0C],
US [auth D7],
VCA [auth W5],
VDA [auth Y4],
VGA [auth 1Q],
VHA [auth 2I],
VIA [auth 3A],
VJA [auth 3S],
VV [auth J4],
VY [auth O8],
WAA [auth S8],
WBA [auth U7],
WR [auth C0],
WT [auth F8],
WU [auth H6],
WW [auth L2],
WX [auth N0],
XEA [auth 0F],
XFA [auth 0Y],
XJA [auth 3T],
XQ [auth A1],
XZ [auth R0],
YAA [auth S9],
YCA [auth W8],
YDA [auth Y6],
YGA [auth 1S],
YHA [auth 2K],
YIA [auth 3C],
YR [auth C1],
YS [auth E1],
YU [auth H8],
YX [auth N1],
YY [auth O9],
ZBA [auth U9],
ZFA [auth 1A],
ZQ [auth A2],
ZT [auth G0],
ZV [auth J6],
ZW [auth L4]
GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
GDP
Query on GDP
Download Ideal Coordinates CCD File 
ABA [auth T0]
ADA [auth W8]
AEA [auth Y8]
AS [auth C2]
AT [auth E2]
ABA [auth T0],
ADA [auth W8],
AEA [auth Y8],
AS [auth C2],
AT [auth E2],
AU [auth G0],
AV [auth H8],
AW [auth J6],
AX [auth L4],
AY [auth N2],
BAA [auth R2],
BCA [auth V0],
BGA [auth 1A],
BR [auth A3],
BS [auth C4],
CFA [auth 0I],
CHA [auth 1U],
CIA [auth 2M],
CZ [auth P4],
DBA [auth T2],
DDA [auth X0],
DEA [auth Z0],
DT [auth E4],
DU [auth G2],
DV [auth I0],
DW [auth J8],
DX [auth L6],
EAA [auth R4],
ECA [auth V2],
EDA [auth X2],
EGA [auth 1C],
EJA [auth 3G],
ER [auth A5],
ES [auth C6],
FFA [auth 0K],
FHA [auth 1W],
FR [auth A7],
FY [auth N6],
FZ [auth P6],
GBA [auth T4],
GEA [auth Z2],
GT [auth E6],
GU [auth G4],
GV [auth I2],
GW [auth K0],
HAA [auth R6],
HCA [auth V4],
HDA [auth X4],
HGA [auth 1E],
HIA [auth 2Q],
HJA [auth 3I],
HS [auth C8],
ICA [auth V6],
IFA [auth 0M],
IR [auth A9],
IX [auth M0],
IY [auth N8],
IZ [auth P8],
JBA [auth T6],
JEA [auth Z4],
JQ [auth 2],
JT [auth E8],
JU [auth G6],
JV [auth I4],
KAA [auth R8],
KDA [auth X6],
KGA [auth 1G],
KHA [auth 2A],
KIA [auth 2S],
KJA [auth 3K],
KS [auth D0],
LCA [auth V8],
LFA [auth 0O],
LR [auth B1],
LW [auth K4],
LX [auth M2],
LY [auth O0],
LZ [auth Q0],
MBA [auth T8],
MEA [auth Z6],
MQ [auth 3],
MT [auth F0],
MU [auth G8],
NAA [auth S0],
NDA [auth X8],
NGA [auth 1K],
NHA [auth 2C],
NIA [auth 2U],
NJA [auth 3M],
NS [auth D2],
OCA [auth W0],
OFA [auth 0Q],
OR [auth B3],
OV [auth I8],
OW [auth K6],
OX [auth M4],
OY [auth O2],
OZ [auth Q2],
PBA [auth U2],
PEA [auth Z8],
PQ [auth 5],
PT [auth F2],
QAA [auth S2],
QDA [auth Y0],
QGA [auth 1M],
QHA [auth 2E],
QIA [auth 2W],
QJA [auth 3O],
QS [auth D4],
RAA [auth S4],
RCA [auth W2],
RFA [auth 0S],
RR [auth B5],
RU [auth H2],
RV [auth J0],
RW [auth K8],
RX [auth M6],
RY [auth O4],
RZ [auth Q4],
SBA [auth U4],
SEA [auth 0A],
SFA [auth 0U],
SQ [auth 7],
TDA [auth Y2],
TGA [auth 1O],
THA [auth 2G],
TIA [auth 2Y],
TJA [auth 3Q],
TS [auth D6],
UAA [auth S6],
UCA [auth W4],
UR [auth B8],
UT [auth F6],
UU [auth H4],
UV [auth J2],
UW [auth L0],
UX [auth M8],
UY [auth O6],
UZ [auth Q6],
VBA [auth U6],
VEA [auth 0C],
VFA [auth 0W],
VQ [auth 9],
VZ [auth Q8],
WDA [auth Y4],
WEA [auth 0E],
WGA [auth 1Q],
WHA [auth 2I],
WIA [auth 3A],
WJA [auth 3S],
WS [auth D8],
XAA [auth S8],
XCA [auth W6],
XR [auth C0],
XS [auth E0],
XT [auth F8],
XU [auth H6],
XV [auth J4],
XW [auth L2],
XX [auth N0],
XY [auth O8],
YBA [auth U8],
YFA [auth 0Y],
YQ [auth A1],
YZ [auth R0],
ZDA [auth Y6],
ZEA [auth 0G],
ZGA [auth 1S],
ZHA [auth 2K],
ZIA [auth 3C]
GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
MG
Query on MG
Download Ideal Coordinates CCD File 
ACA [auth U9]
AFA [auth 0H]
AGA [auth 1A]
AR [auth A2]
BBA [auth T1]
ACA [auth U9],
AFA [auth 0H],
AGA [auth 1A],
AR [auth A2],
BBA [auth T1],
BDA [auth W9],
BEA [auth Y9],
BHA [auth 1T],
BIA [auth 2L],
BJA [auth 3D],
BT [auth E3],
BV [auth H9],
BW [auth J7],
BX [auth L5],
BZ [auth P4],
CAA [auth R3],
CGA [auth 1B],
CJA [auth 3F],
CU [auth G1],
CY [auth N3],
DCA [auth V2],
DFA [auth 0J],
DHA [auth 1V],
DR [auth A4],
DS [auth C5],
EBA [auth T3],
EIA [auth 2N],
ET [auth E5],
EU [auth G3],
EW [auth J9],
EY [auth N6],
EZ [auth P6],
FDA [auth X3],
FEA [auth Z2],
FIA [auth 2P],
FJA [auth 3H],
FS [auth C7],
FV [auth I1],
FX [auth L7],
GAA [auth R6],
GCA [auth V3],
GFA [auth 0L],
GGA [auth 1D],
GR [auth A8],
GX [auth L9],
GY [auth N7],
GZ [auth P7],
HBA [auth T5],
HHA [auth 1X],
HT [auth E7],
HV [auth I3],
IAA [auth R7],
IDA [auth X5],
IEA [auth Z3],
IGA [auth 1F],
IHA [auth 1Z],
IIA [auth 2R],
IU [auth G5],
IW [auth K1],
JCA [auth V7],
JFA [auth 0N],
JJA [auth 3K],
JS [auth C9],
JW [auth K3],
JX [auth M1],
KBA [auth T7],
KEA [auth Z5],
KQ [auth 2],
KR [auth B0],
KT [auth E9],
KY [auth O0],
KZ [auth P9],
LAA [auth R9],
LHA [auth 2B],
LIA [auth 2T],
LJA [auth 3L],
LU [auth G7],
LV [auth I5],
MCA [auth V9],
MDA [auth X7],
MFA [auth 0P],
MGA [auth 1H],
MS [auth D1],
MV [auth I7],
MW [auth K5],
MX [auth M3],
MY [auth O1],
MZ [auth Q1],
NBA [auth U1],
NR [auth B2],
OAA [auth S1],
ODA [auth X9],
OEA [auth Z7],
OHA [auth 2D],
OIA [auth 2V],
OJA [auth 3N],
OQ [auth 4],
OT [auth F1],
OU [auth G9],
PFA [auth 0R],
PGA [auth 1L],
PR [auth B4],
PS [auth D3],
PV [auth I9],
PX [auth M5],
PY [auth O3],
PZ [auth Q3],
QBA [auth U3],
QCA [auth W2],
QQ [auth 6],
QU [auth H2],
QW [auth K7],
REA [auth 0A],
RHA [auth 2F],
RIA [auth 2X],
RT [auth F3],
SCA [auth W3],
SDA [auth Y1],
SGA [auth 1N],
SJA [auth 3P],
SS [auth D5],
SV [auth J1],
SY [auth O5],
SZ [auth Q5],
TAA [auth S5],
TBA [auth U5],
TEA [auth 0B],
TR [auth B7],
TT [auth F5],
TU [auth H3],
TW [auth K9],
TX [auth M7],
UDA [auth Y3],
UFA [auth 0W],
UGA [auth 1P],
UHA [auth 2H],
UIA [auth 2Z],
UJA [auth 3R],
UQ [auth 8],
VAA [auth S7],
VR [auth B9],
VS [auth D7],
VT [auth F7],
VU [auth H5],
VW [auth L1],
VX [auth M9],
WCA [auth W5],
WFA [auth 0X],
WQ [auth A0],
WV [auth J4],
WY [auth O8],
WZ [auth Q9],
XBA [auth U7],
XDA [auth Y5],
XGA [auth 1R],
XHA [auth 2J],
XIA [auth 3B],
YEA [auth 0F],
YJA [auth 3T],
YT [auth F9],
YV [auth J5],
YW [auth L3],
ZAA [auth S9],
ZCA [auth W8],
ZR [auth C1],
ZS [auth E1],
ZU [auth H8],
ZX [auth N1],
ZY [auth O9],
ZZ [auth R1]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONRELION

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM032843

Revision History  (Full details and data files)

  • Version 1.0: 2019-11-13
    Type: Initial release
  • Version 1.1: 2020-01-08
    Changes: Author supporting evidence