6TIK

Hepatitis B virus core shell--virus-like particle with NadA epitope


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

An assessment of the use of Hepatitis B Virus core protein virus-like particles to display heterologous antigens from Neisseria meningitidis.

Aston-Deaville, S.Carlsson, E.Saleem, M.Thistlethwaite, A.Chan, H.Maharjan, S.Facchetti, A.Feavers, I.M.Alistair Siebert, C.Collins, R.F.Roseman, A.Derrick, J.P.

(2020) Vaccine 38: 3201-3209

  • DOI: https://doi.org/10.1016/j.vaccine.2020.03.001
  • Primary Citation of Related Structures:  
    6TIK

  • PubMed Abstract: 

    Neisseria meningitidis is the causative agent of meningococcal meningitis and sepsis and remains a significant public health problem in many countries. Efforts to develop a comprehensive vaccine against serogroup B meningococci have focused on the use of surface-exposed outer membrane proteins. Here we report the use of virus-like particles derived from the core protein of Hepatitis B Virus, HBc, to incorporate antigen domains derived from Factor H binding protein (FHbp) and the adhesin NadA. The extracellular domain of NadA was inserted into the major immunodominant region of HBc, and the C-terminal domain of FHbp at the C-terminus (CFHbp), creating a single polypeptide chain 3.7-fold larger than native HBc. Remarkably, cryoelectron microscopy revealed that the construct formed assemblies that were able to incorporate both antigens with minimal structural changes to native HBc. Electron density was weak for NadA and absent for CFHbp, partly attributable to domain flexibility. Following immunization of mice, three HBc fusions (CFHbp or NadA alone, NadA + CFHbp) were able to induce production of IgG1, IgG2a and IgG2b antibodies reactive against their respective antigens at dilutions in excess of 1:18,000. However, only HBc fusions containing NadA elicited the production of antibodies with serum bactericidal activity. It is hypothesized that this improved immune response is attributable to the adoption of a more native-like folding of crucial conformational epitopes of NadA within the chimeric VLP. This work demonstrates that HBc can incorporate insertions of large antigen domains but that maintenance of their three-dimensional structure is likely to be critical in obtaining a protective response.


  • Organizational Affiliation

    Lydia Becker Institute of Immunology and Inflammation, School of Biological Sciences, Faculty of Biology, Medicine and Health, Manchester Academic Health Science Centre, University of Manchester, Manchester M13 9PL, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein,Putative adhesin/invasin,Capsid protein,Factor H-binding proteinA [auth C],
B [auth D],
C [auth B],
D [auth A]
589Hepatitis B virusNeisseria meningitidisMutation(s): 0 
Gene Names: CccorePreCnadAgna1870fhbp
UniProt
Find proteins for Q6QCC2 (Neisseria meningitidis)
Explore Q6QCC2 
Go to UniProtKB:  Q6QCC2
Find proteins for D3IRF1 (Neisseria meningitidis)
Explore D3IRF1 
Go to UniProtKB:  D3IRF1
Find proteins for Q67855 (Hepatitis B virus)
Explore Q67855 
Go to UniProtKB:  Q67855
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsD3IRF1Q6QCC2Q67855
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIXPHENIX.real-space_refine
RECONSTRUCTIONcryoSPARCv0.65

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research CouncilUnited KingdomBRIC PhD, BBSRC Reference BB/K02034X/1

Revision History  (Full details and data files)

  • Version 1.0: 2020-04-29
    Type: Initial release