6RBB

CRYSTAL STRUCTURE OF the VhH-domain of anti-IL-17A antibody netakimab

PDB DOI: https://doi.org/10.2210/pdb6RBB/pdb

Classification: IMMUNE SYSTEM
Organism(s): Lama glama
Expression System: Cricetulus griseus
Mutation(s): No

Deposited: 2019-04-10 Released: 2020-05-13
Deposition Author(s): Kostareva, O.S., Kolyadenko, I.A., Ulitin, A.B., Ekimova, V.M., Evdokimov, S.R., Garber, M.B., Tishchenko, T.V., Gabdulkhakov, A.G.
Funding Organization(s): Russian Science Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å
R-Value Free: 0.280
R-Value Work: 0.215
R-Value Observed: 0.219

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

CRYSTAL STRUCTURE OF the VhH-domain of anti-IL-17A antibody netakimab

Kostareva, O.S., Kolyadenko, I.A., Ulitin, A.B., Ekimova, V.M., Evdokimov, S.R., Garber, M.B., Tishchenko, T.V., Gabdulkhakov, A.G.

To be published.

Macromolecule Content

Total Structure Weight: 52.97 kDa
Atom Count: 3,701
Modelled Residue Count: 483
Deposited Residue Count: 492
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
VHH domain of netakimab	A [auth H], B [auth I], C [auth J], D [auth K]	123	Lama glama	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å
R-Value Free: 0.280
R-Value Work: 0.215
R-Value Observed: 0.219
Space Group: P 2 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 54.872	α = 90
b = 72.499	β = 90
c = 129.385	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2020-05-13

Deposition Author(s):

Kostareva, O.S.

Kolyadenko, I.A.

Evdokimov, S.R.

Tishchenko, T.V.

Gabdulkhakov, A.G.

Funding Organization	Location	Grant Number
Russian Science Foundation	Russian Federation	17-74-10156

Revision History (Full details and data files)

Version 1.0: 2020-05-13
Type: Initial release
Version 1.1: 2024-01-24
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.