6QTC

tSH2 domain of transcription elongation factor Spt6 complexed with tyrosine phosphorylated CTD

PDB DOI: https://doi.org/10.2210/pdb6QTC/pdb
BMRB: 34362

Classification: GENE REGULATION
Organism(s): Nakaseomyces glabratus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2019-02-24 Released: 2020-07-15
Deposition Author(s): Brazda, P., Krejcikova, M., Smirakova, E., Kubicek, K., Stefl, R.
Funding Organization(s): Grant Agency of the Czech Republic

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 500
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

tSH2 domain of transcription elongation factor Spt6 complexed with tyrosine phosphorylated CTD

Brazda, P., Krejcikova, M., Kasiliauskaite, A., Smirakova, E., Klumpler, T., Vacha, R., Kubicek, K., Stefl, R.

To be published.

Macromolecule Content

Total Structure Weight: 25.06 kDa
Atom Count: 1,767
Modelled Residue Count: 211
Deposited Residue Count: 212
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
tSH2 domain of transcription elongation factor Spt6	A	196	Nakaseomyces glabratus	Mutation(s): 0
UniProt
Find proteins for Q6FLB1 (Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138)) Explore Q6FLB1 Go to UniProtKB: Q6FLB1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q6FLB1
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Tyrosine phosphorylated CTD	B	16	Nakaseomyces glabratus	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
PTR Query on PTR	B	L-PEPTIDE LINKING	C₉ H₁₂ N O₆ P		TYR

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 500
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2020-07-15

Deposition Author(s):

Funding Organization	Location	Grant Number
Grant Agency of the Czech Republic	Czech Republic	GA15-24117S

Revision History (Full details and data files)

Version 1.0: 2020-07-15
Type: Initial release
Version 1.1: 2023-06-14
Changes: Database references, Other
Version 1.2: 2023-11-15
Changes: Data collection

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.