6NEZ

Trypanosoma brucei - BDF5, Tb427tmp.01.5000 A, solved with PF-CBP1

• PDB DOI: https://doi.org/10.2210/pdb6NEZ/pdb

• Classification: TRANSCRIPTION
• Organism(s): Trypanosoma brucei brucei TREU927
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2018-12-18 Released: 2019-01-23 
• Deposition Author(s): Lin, Y.H., Dong, A., Tempel, W., McAuley, J., Loppnau, P., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Hui, R., Vedadi, M., Harding, R.J., Structural Genomics Consortium (SGC)

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 0.246 
• R-Value Work: 0.204 
• R-Value Observed: 0.206 

Literature

Trypanosoma brucei - BDF5, Tb427tmp.01.5000 A, solved with PF-CBP1

Lin, Y.H., Dong, A., Tempel, W., McAuley, J., Loppnau, P., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Vedadi, M., Harding, R.J., Structural Genomics Consortium (SGC)

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors.

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 4 assigned by authors.

Macromolecule Content

• Total Structure Weight: 58.21 kDa 
• Atom Count: 3,810 
• Modelled Residue Count: 463 
• Deposited Residue Count: 500 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	A, B, C, D	125	Trypanosoma brucei brucei TREU927	Mutation(s): 0  Gene Names: Tb11.01.5000
UniProt
Find proteins for Q382J7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1)) Explore Q382J7  Go to UniProtKB:  Q382J7

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
KJS	E [auth A], H [auth B], K [auth C], M [auth D]	5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[2-(morpholin-4-yl)ethyl]-2-[2-(4-propoxyphenyl)ethyl]-1H-benzimidazole C29 H36 N4 O3 CGWBJJZOKGZCSJ-UHFFFAOYSA-N
UNX	F [auth A], G [auth A], I [auth B], J [auth B], L [auth C]	UNKNOWN ATOM OR ION X

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 0.246 
• R-Value Work: 0.204 
• R-Value Observed: 0.206 
• Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.994	α = 90
b = 151.493	β = 90
c = 156.18	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-3000	data scaling
PHASER	phasing
PDB_EXTRACT	data extraction
HKL-3000	data reduction

Structure Validation

Currently 6NEZ does not have a validation slider image.

Entry History 

Deposition Data

• Released Date: 2019-01-23 
Deposition Author(s): Lin, Y.H., Dong, A., Tempel, W., McAuley, J., Loppnau, P., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Hui, R., Vedadi, M., Harding, R.J., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2019-01-23
  Type: Initial release
  
• Version 1.1: 2023-10-11
  Changes: Data collection, Database references, Refinement description