6LYG

Cryo-EM structure of the calcium homeostasis modulator 1 channel


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Cryo-EM structure of the calcium homeostasis modulator 1 channel.

Ren, Y.Wen, T.Xi, Z.Li, S.Lu, J.Zhang, X.Yang, X.Shen, Y.

(2020) Sci Adv 6: eaba8161-eaba8161

  • DOI: https://doi.org/10.1126/sciadv.aba8161
  • Primary Citation of Related Structures:  
    6LYG

  • PubMed Abstract: 

    Calcium homeostasis modulator 1 (CALHM1) is a voltage-gated ATP release channel that plays an important role in neural gustatory signaling and the pathogenesis of Alzheimer's disease. Here, we present a cryo-electron microscopy structure of full-length Ca 2+ -free CALHM1 from Danio rerio at an overall resolution of 3.1 Å. Our structure reveals an octameric architecture with a wide pore diameter of ~20 Å, presumably representing the active conformation. The overall structure is substantially different from that of the isoform CALHM2, which forms both undecameric hemichannels and gap junctions. The N-terminal small helix folds back to the pore and forms an antiparallel interaction with transmembrane helix 1. Structural analysis revealed that the extracellular loop 1 region within the dimer interface may contribute to oligomeric assembly. A positive potential belt inside the pore was identified that may modulate ion permeation. Our structure offers insights into the assembly and gating mechanism of the CALHM1 channel.


  • Organizational Affiliation

    State Key Laboratory of Medicinal Chemical Biology and College of Pharmacy, Nankai University, Tianjin 300350, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Calcium homeostasis modulator 1
A, B, C, D, E
A, B, C, D, E, F, G, H
358Danio rerioMutation(s): 0 
Gene Names: calhm1
Membrane Entity: Yes 
UniProt
Find proteins for E7F2J4 (Danio rerio)
Explore E7F2J4 
Go to UniProtKB:  E7F2J4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE7F2J4
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (MoST, China)China2017YFA0504801
National Natural Science Foundation of China (NSFC)China91954119
National Natural Science Foundation of China (NSFC)China31870736
National Natural Science Foundation of China (NSFC)China31570750
National Natural Science Foundation of China (NSFC)China31870834

Revision History  (Full details and data files)

  • Version 1.0: 2020-10-07
    Type: Initial release