6LSY

AAA+ ATPase, ClpL from Streptococcus pneumoniae - ATP bound


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.33 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

ClpL is a functionally active tetradecameric AAA+ chaperone, distinct from hexameric/dodecameric ones.

Kim, G.Lee, S.G.Han, S.Jung, J.Jeong, H.S.Hyun, J.K.Rhee, D.K.Kim, H.M.Lee, S.

(2020) FASEB J 34: 14353-14370

  • DOI: https://doi.org/10.1096/fj.202000843R
  • Primary Citation of Related Structures:  
    6LSY, 6LT4

  • PubMed Abstract: 

    AAA+ (ATPases associated with diverse cellular activities) chaperones are involved in a plethora of cellular activities to ensure protein homeostasis. The function of AAA+ chaperones is mostly modulated by their hexameric/dodecameric quaternary structures. Here we report the structural and biochemical characterizations of a tetradecameric AAA+ chaperone, ClpL from Streptococcus pneumoniae. ClpL exists as a tetradecamer in solution in the presence of ATP. The cryo-EM structure of ClpL at 4.5 Å resolution reveals a striking tetradecameric arrangement. Solution structures of ClpL derived from small-angle X-ray scattering data suggest that the tetradecameric ClpL could assume a spiral conformation found in active hexameric/dodecameric AAA+ chaperone structures. Vertical positioning of the middle domain accounts for the head-to-head arrangement of two heptameric rings. Biochemical activity assays with site-directed mutagenesis confirmed the critical roles of residues both in the integrity of the tetradecameric arrangement and activities of ClpL. Non-conserved Q321 and R670 are crucial in the heptameric ring assembly of ClpL. These results establish that ClpL is a functionally active tetradecamer, clearly distinct from hexameric/dodecameric AAA+ chaperones.


  • Organizational Affiliation

    Department of Biological Sciences, Sungkyunkwan University, Suwon, Korea.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ATP-dependent Clp protease, ATP-binding subunit
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L, M, N
701Streptococcus pneumoniaeMutation(s): 2 
Gene Names: clpLSPRM200_0307
UniProt
Find proteins for A0A2U3RY34 (Streptococcus pneumoniae)
Explore A0A2U3RY34 
Go to UniProtKB:  A0A2U3RY34
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2U3RY34
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.33 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Korea)Korea, Republic OfNRF-2018R1A2B6004367
National Research Foundation (NRF, Korea)Korea, Republic OfNRF-2017R1A5A1014560
Rural Development AdministrationKorea, Republic OfPJ01367602
National Research Foundation (NRF, Korea)Korea, Republic OfIBS-R030-C1

Revision History  (Full details and data files)

  • Version 1.0: 2021-01-27
    Type: Initial release
  • Version 1.1: 2024-03-27
    Changes: Data collection, Database references