6KSR

Crystal structure of Hexokinase from Eimeria tenella

PDB DOI: https://doi.org/10.2210/pdb6KSR/pdb

Classification: TRANSFERASE
Organism(s): Eimeria tenella
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2019-08-25 Released: 2020-09-02
Deposition Author(s): Yuan, H., Sun, M.F., Wang, Y.H., Liao, S.Q.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.37 Å
R-Value Free: 0.161
R-Value Work: 0.138
R-Value Observed: 0.139

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Hexokinase from Eimeria tenella

Yuan, H., Sun, M.F., Wang, Y.H., Liao, S.Q.

To be published.

Macromolecule Content

Total Structure Weight: 50.68 kDa
Atom Count: 4,532
Modelled Residue Count: 467
Deposited Residue Count: 467
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phosphotransferase	A	467	Eimeria tenella	Mutation(s): 0 EC: 2.7.1
UniProt
Find proteins for U6KUE1 (Eimeria tenella) Explore U6KUE1 Go to UniProtKB: U6KUE1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	U6KUE1
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GLA (Subject of Investigation/LOI) Query on GLA Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A]	B [auth A]	alpha-D-galactopyranose C₆ H₁₂ O₆ WQZGKKKJIJFFOK-PHYPRBDBSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.37 Å
R-Value Free: 0.161
R-Value Work: 0.138
R-Value Observed: 0.139
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 68	α = 90
b = 77.05	β = 90
c = 105.15	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
MOLREP	phasing

Structure Validation

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Ligand Structure Quality Assessment

Entry History

Deposition Data

Released Date: 2020-09-02

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2020-09-02
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.