6KF8

OsACBP2 in complex with C18:3-CoA

PDB DOI: https://doi.org/10.2210/pdb6KF8/pdb

Classification: PLANT PROTEIN
Organism(s): Oryza sativa Japonica Group
Expression System: Escherichia coli-Pichia pastoris shuttle vector pPpARG4
Mutation(s): No

Deposited: 2019-07-06 Released: 2020-10-21
Deposition Author(s): Jin, J., Chye, M.L.
Funding Organization(s): The University Grants Committee, Research Grants Council (RGC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.60 Å
R-Value Free: 0.279
R-Value Work: 0.228
R-Value Observed: 0.230

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

OsACBP2 in complex with C18:3-CoA

Jin, J., Chye, M.L.

To be published.

Macromolecule Content

Total Structure Weight: 62.43 kDa
Atom Count: 4,256
Modelled Residue Count: 534
Deposited Residue Count: 558
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acyl-CoA-binding domain-containing protein 2	A [auth C] B [auth A] C [auth D] D [auth F] E [auth I] A [auth C], B [auth A], C [auth D], D [auth F], E [auth I], F [auth K]	93	Oryza sativa Japonica Group	Mutation(s): 0 Gene Names: ACBP2, Os06g0115300, LOC_Os06g02490, OsJ_19900, OSJNBa0019F11.14, P0541H01.36
UniProt
Find proteins for Q5VRM0 (Oryza sativa subsp. japonica) Explore Q5VRM0 Go to UniProtKB: Q5VRM0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q5VRM0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.60 Å
R-Value Free: 0.279
R-Value Work: 0.228
R-Value Observed: 0.230
Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 149.965	α = 90
b = 149.965	β = 90
c = 95.443	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2020-10-21

Deposition Author(s):

Funding Organization	Location	Grant Number
The University Grants Committee, Research Grants Council (RGC)	Hong Kong	--

Revision History (Full details and data files)

Version 1.0: 2020-10-21
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.