6H1W

Crystal Structure of protein MJ1004 from Mathanocaldococcus jannaschii

PDB DOI: https://doi.org/10.2210/pdb6H1W/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Methanocaldococcus jannaschii DSM 2661
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-07-12 Released: 2019-07-31
Deposition Author(s): Alfonso Martinez-Cruz, L., Oyenarte, I., Fernandez-Rodriguez, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.39 Å
R-Value Free: 0.250
R-Value Work: 0.227
R-Value Observed: 0.229

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal Structure of protein MJ1004 from Mathanocaldococcus jannaschii

Alfonso Martinez-Cruz, L., Oyenarte, I., Fernandez-Rodriguez, C.

To be published.

Macromolecule Content

Total Structure Weight: 49.91 kDa
Atom Count: 3,284
Modelled Residue Count: 415
Deposited Residue Count: 428
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MJ1004	A, B	214	Methanocaldococcus jannaschii DSM 2661	Mutation(s): 0 Gene Names: MJ1004
UniProt
Find proteins for Q58410 (Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)) Explore Q58410 Go to UniProtKB: Q58410
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q58410
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.39 Å
R-Value Free: 0.250
R-Value Work: 0.227
R-Value Observed: 0.229
Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 80.899	α = 90
b = 80.899	β = 90
c = 178.95	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PDB_EXTRACT	data extraction
AutoSol	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2019-07-31

Deposition Author(s):

Alfonso Martinez-Cruz, L.

Fernandez-Rodriguez, C.

Funding Organization	Location	Grant Number
	Spain	PI2010-17
	Spain	ETORTEK IE05-147, IE07-202
	Spain	Exp. 7/13/08/2006/11
	Spain	Exp. 7/13/08/2005/14
	Spain	MICINN BFU2010-17857
	Spain	CSD2008-00005

Revision History (Full details and data files)

Version 1.0: 2019-07-31
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.