6BAC

Crystal Structure of Aspartate-Semialdehyde Dehydrogenase from Neisseria gonorrhoeae

• PDB DOI: https://doi.org/10.2210/pdb6BAC/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Neisseria gonorrhoeae
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2017-10-12 Released: 2017-10-25 
• Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 0.228 
• R-Value Work: 0.180 
• R-Value Observed: 0.183 

Literature

Crystal Structure of Aspartate-Semialdehyde Dehydrogenase from Neisseria gonorrhoeae

Muruthi, M.M., Dranow, D.M., Lorimer, D.D., Edwards, T.E.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 41.64 kDa 
• Atom Count: 3,038 
• Modelled Residue Count: 373 
• Deposited Residue Count: 379 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Aspartate-semialdehyde dehydrogenase	A	379	Neisseria gonorrhoeae	Mutation(s): 0  Gene Names: asd, WHOL_00763, WHOL_01676, WHOO_00778, WHOO_02186C EC: 1.2.1.11
UniProt
Find proteins for Q5F5D2 (Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)) Explore Q5F5D2  Go to UniProtKB:  Q5F5D2

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	B [auth A], C [auth A], D [auth A], E [auth A], F [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
EDO	G [auth A], H [auth A], I [auth A], J [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 0.228 
• R-Value Work: 0.180 
• R-Value Observed: 0.183 
• Space Group: P 3₁ 2 1
• Diffraction Data: https://doi.org/10.18430/M36BAC

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 109	α = 90
b = 109	β = 90
c = 72.4	γ = 120

Software Package:

Software Name	Purpose
XSCALE	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
MoRDa	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-10-25 
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History  

• Version 1.0: 2017-10-25
  Type: Initial release
  
• Version 1.1: 2023-10-04
  Changes: Data collection, Database references, Refinement description