6ZNW

Methanosaeta concilii ATP citrate lyase (D541A mutant) in complex with (3S)-citryl-CoA.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.12 Å
  • R-Value Free: 0.203 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.187 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history


Literature

Acetyl-CoA is produced by the citrate synthase homology module of ATP-citrate lyase.

Verstraete, K.Verschueren, K.H.G.Dansercoer, A.Savvides, S.N.

(2021) Nat Struct Mol Biol 28: 636-638


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Citrate lyase, subunit 1421Methanothrix soehngeniiMutation(s): 0 
Gene Names: ACLY-A
EC: 2.3.3.8
UniProt
Find proteins for A0A7K4AG75 (Methanothrix soehngenii)
Explore A0A7K4AG75 
Go to UniProtKB:  A0A7K4AG75
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7K4AG75
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Methanosaeta concilii ACLY-B631Methanothrix soehngeniiMutation(s): 0 
Gene Names: ACLY-B
EC: 2.3.3.8
UniProt
Find proteins for A0A7K4AGC1 (Methanothrix soehngenii)
Explore A0A7K4AGC1 
Go to UniProtKB:  A0A7K4AGC1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7K4AGC1
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.12 Å
  • R-Value Free: 0.203 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.187 
  • Space Group: I 2 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 73.531α = 90
b = 154.373β = 90
c = 276.054γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Research Foundation - Flanders (FWO)BelgiumG0G0619N

Revision History  (Full details and data files)

  • Version 1.0: 2021-07-14
    Type: Initial release
  • Version 1.1: 2021-08-11
    Changes: Database references
  • Version 1.2: 2021-08-25
    Changes: Database references
  • Version 1.3: 2024-01-31
    Changes: Data collection, Refinement description