6WIK

Cryo-EM structure of SLC40/ferroportin with Fab in the presence of hepcidin


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 2.0 of the entry. See complete history


Literature

Structural basis of ion transport and inhibition in ferroportin.

Pan, Y.Ren, Z.Gao, S.Shen, J.Wang, L.Xu, Z.Yu, Y.Bachina, P.Zhang, H.Fan, X.Laganowsky, A.Yan, N.Zhou, M.

(2020) Nat Commun 11: 5686-5686

  • DOI: https://doi.org/10.1038/s41467-020-19458-6
  • Primary Citation of Related Structures:  
    6VYH, 6WIK

  • PubMed Abstract: 

    Ferroportin is an iron exporter essential for releasing cellular iron into circulation. Ferroportin is inhibited by a peptide hormone, hepcidin. In humans, mutations in ferroportin lead to ferroportin diseases that are often associated with accumulation of iron in macrophages and symptoms of iron deficiency anemia. Here we present the structures of the ferroportin from the primate Philippine tarsier (TsFpn) in the presence and absence of hepcidin solved by cryo-electron microscopy. TsFpn is composed of two domains resembling a clamshell and the structure defines two metal ion binding sites, one in each domain. Both structures are in an outward-facing conformation, and hepcidin binds between the two domains and reaches one of the ion binding sites. Functional studies show that TsFpn is an electroneutral H + /Fe 2+ antiporter so that transport of each Fe 2+ is coupled to transport of two H + in the opposite direction. Perturbing either of the ion binding sites compromises the coupled transport of H + and Fe 2+ . These results establish the structural basis of metal ion binding, transport and inhibition in ferroportin and provide a blueprint for targeting ferroportin in pharmacological intervention of ferroportin diseases.


  • Organizational Affiliation

    Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX, 77030, USA. yaping.pan@bcm.edu.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
11F9 Fab light-chainA [auth C]213Mus musculusMutation(s): 0 
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
11F9 Fab heavy-chainB [auth D]238Mus musculusMutation(s): 0 
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Solute carrier family 40 proteinC [auth A]577Carlito syrichtaMutation(s): 0 
Gene Names: SLC40A1
Membrane Entity: Yes 
UniProt
Find proteins for A0A1U7U6F1 (Carlito syrichta)
Explore A0A1U7U6F1 
Go to UniProtKB:  A0A1U7U6F1
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UniProt GroupA0A1U7U6F1
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)United StatesDK122784
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United StatesHL086392
Cancer Prevention and Research Institute of Texas (CPRIT)United StatesR1223

Revision History  (Full details and data files)

  • Version 1.0: 2020-11-11
    Type: Initial release
  • Version 1.1: 2020-11-25
    Changes: Database references
  • Version 2.0: 2022-08-31
    Type: Coordinate replacement
    Reason: Sequence discrepancy
    Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Polymer sequence, Source and taxonomy, Structure summary