Download Mendeley2.52 Angstrom Resolution Crystal Structure of 6-phospho-alpha-glucosidase from Gut Microorganisms in Complex with NAD and Glucose-6-phosphate
Wu, R., Kim, Y., Endres, M., Joachimiak, J.To be published.
6WBT
2.52 Angstrom Resolution Crystal Structure of 6-phospho-alpha-glucosidase from Gut Microorganisms in Complex with NAD and Glucose-6-phosphate
- PDB DOI: https://doi.org/10.2210/pdb6WBT/pdb
- Classification: HYDROLASE
- Organism(s): metagenomes
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2020-03-27 Released: 2021-03-31
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.52 Å
- R-Value Free: 0.266
- R-Value Work: 0.227
- R-Value Observed: 0.229
Starting Model: experimental
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This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| cellulase IBT99 | 443 | metagenomes | Mutation(s): 0 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAD (Subject of Investigation/LOI) Query on NAD | G [auth A], J [auth B], M [auth C], R [auth D] | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N |  | ||
| G6P (Subject of Investigation/LOI) Query on G6P | F [auth A], L [auth C], Q [auth D] | 6-O-phosphono-alpha-D-glucopyranose C6 H13 O9 P NBSCHQHZLSJFNQ-DVKNGEFBSA-N |  | ||
| PO4 Query on PO4 | I [auth B], N [auth C] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| EDO Query on EDO | O [auth D] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| MN Query on MN | E [auth A], H [auth B], K [auth C], P [auth D] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.52 Å
- R-Value Free: 0.266
- R-Value Work: 0.227
- R-Value Observed: 0.229
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 102.797 | α = 90 |
| b = 219.724 | β = 90 |
| c = 97.978 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2021-03-31 Deposition Author(s): Wu, R., Kim, Y., Endres, M., Joachimiak, J.
Revision History (Full details and data files)
- Version 1.0: 2021-03-31
Type: Initial release - Version 1.1: 2023-10-18
Changes: Data collection, Database references, Refinement description - Version 1.2: 2023-11-15
Changes: Data collection
