HIV vaccine candidate with V1 deletion reveals virus vulnerability to V2 antibodies
Gorman, J., Ahmadi, M., Kwong, P.D.(2020) iScience 
Experimental Data Snapshot
Starting Model: experimental
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(2020) iScience 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
NCI09 light chain | A [auth L] | 214 | Macaca mulatta | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Glycosylation | |||||
Glycosylation Sites: 1 | |||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
SIV V2 peptide | B [auth G] | 16 | Simian immunodeficiency virus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P08810 (Simian immunodeficiency virus (isolate Mm251)) Explore P08810  Go to UniProtKB:  P08810 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P08810 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
NCI09 heavy chain | C [auth H] | 236 | Macaca mulatta | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | D [auth A] | 4 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G32152BH GlyCosmos:  G32152BH GlyGen:  G32152BH |
Length ( Å ) | Angle ( ˚ ) |
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a = 65.76 | α = 90 |
b = 72.087 | β = 90 |
c = 100.833 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
HKL-2000 | data scaling |
PDB_EXTRACT | data extraction |
HKL-2000 | data reduction |
PHENIX | phasing |
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