6V7X

Structure of a phage-encoded quorum sensing anti-activator, Aqs1 bound to LasR


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.249 

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This is version 1.2 of the entry. See complete history


Literature

A phage-encoded anti-activator inhibits quorum sensing in Pseudomonas aeruginosa.

Shah, M.Taylor, V.L.Bona, D.Tsao, Y.Stanley, S.Y.Pimentel-Elardo, S.M.McCallum, M.Bondy-Denomy, J.Howell, P.L.Nodwell, J.R.Davidson, A.R.Moraes, T.F.Maxwell, K.L.

(2021) Mol Cell 81: 571-583.e6

  • DOI: https://doi.org/10.1016/j.molcel.2020.12.011
  • Primary Citation of Related Structures:  
    6V7U, 6V7V, 6V7W, 6V7X

  • PubMed Abstract: 

    The arms race between bacteria and phages has led to the evolution of diverse anti-phage defenses, several of which are controlled by quorum-sensing pathways. In this work, we characterize a quorum-sensing anti-activator protein, Aqs1, found in Pseudomonas phage DMS3. We show that Aqs1 inhibits LasR, the master regulator of quorum sensing, and present the crystal structure of the Aqs1-LasR complex. The 69-residue Aqs1 protein also inhibits PilB, the type IV pilus assembly ATPase protein, which blocks superinfection by phages that require the pilus for infection. This study highlights the remarkable ability of small phage proteins to bind multiple host proteins and disrupt key biological pathways. As quorum sensing influences various anti-phage defenses, Aqs1 provides a mechanism by which infecting phages might simultaneously dampen multiple defenses. Because quorum-sensing systems are broadly distributed across bacteria, this mechanism of phage counter-defense may play an important role in phage-host evolutionary dynamics.


  • Organizational Affiliation

    Department of Biochemistry, University of Toronto, MaRS West Tower, 661 University Avenue, Toronto, ON M5G 1M1, Canada.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
QUORUM SENSING ANTI-ACTIVATOR PROTEIN AQS1
A, C
69Casadabanvirus DMS3Mutation(s): 0 
Gene Names: DMS3-3
UniProt
Find proteins for A0SML3 (Casadabanvirus DMS3)
Explore A0SML3 
Go to UniProtKB:  A0SML3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0SML3
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Transcriptional regulator LasR239Pseudomonas aeruginosa UCBPP-PA14Mutation(s): 0 
Gene Names: lasRPA14_45960
UniProt
Find proteins for P25084 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
Explore P25084 
Go to UniProtKB:  P25084
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP25084
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
OHN (Subject of Investigation/LOI)
Query on OHN

Download Ideal Coordinates CCD File 
D [auth B]N-3-OXO-DODECANOYL-L-HOMOSERINE LACTONE
C16 H27 N O4
PHSRRHGYXQCRPU-AWEZNQCLSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.249 
  • Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 104.536α = 90
b = 104.536β = 90
c = 102.601γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
Cootmodel building
XSCALEdata scaling
PHENIXphasing
XDSdata processing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Canadian Institutes of Health Research (CIHR)CanadaMOP-136845

Revision History  (Full details and data files)

  • Version 1.0: 2020-12-16
    Type: Initial release
  • Version 1.1: 2021-06-30
    Changes: Database references
  • Version 1.2: 2023-10-11
    Changes: Data collection, Database references, Refinement description