6PNY

X-ray Structure of Flpp3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.198 
  • R-Value Observed: 0.199 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

XFEL and NMR Structures of Francisella Lipoprotein Reveal Conformational Space of Drug Target against Tularemia.

Zook, J.Shekhar, M.Hansen, D.Conrad, C.Grant, T.Gupta, C.White, T.Barty, A.Basu, S.Zhao, Y.Zatsepin, N.Ishchenko, A.Batyuk, A.Gati, C.Li, C.Galli, L.Coe, J.Hunter, M.Liang, M.Weierstall, U.Nelson, G.James, D.Stauch, B.Craciunescu, F.Thifault, D.Liu, W.Cherezov, V.Singharoy, A.Fromme, P.

(2020) Structure 28: 540

  • DOI: https://doi.org/10.1016/j.str.2020.02.005
  • Primary Citation of Related Structures:  
    6PNY

  • PubMed Abstract: 

    Francisella tularensis is the causative agent for the potentially fatal disease tularemia. The lipoprotein Flpp3 has been identified as a virulence determinant of tularemia with no sequence homology outside the Francisella genus. We report a room temperature structure of Flpp3 determined by serial femtosecond crystallography that exists in a significantly different conformation than previously described by the NMR-determined structure. Furthermore, we investigated the conformational space and energy barriers between these two structures by molecular dynamics umbrella sampling and identified three low-energy intermediate states, transitions between which readily occur at room temperature. We have also begun to investigate organic compounds in silico that may act as inhibitors to Flpp3. This work paves the road to developing targeted therapeutics against tularemia and aides in our understanding of the disease mechanisms of tularemia.


  • Organizational Affiliation

    Center for Applied Structural Discovery, the Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Flpp3119Francisella tularensis subsp. tularensis SCHU S4Mutation(s): 0 
Gene Names: BZ14_1359
UniProt
Find proteins for Q5NF33 (Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4))
Explore Q5NF33 
Go to UniProtKB:  Q5NF33
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5NF33
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.198 
  • R-Value Observed: 0.199 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 28α = 90
b = 51.9β = 90
c = 68.1γ = 90
Software Package:
Software NamePurpose
PHENIXmodel building
PHENIXrefinement
iMOSFLMdata reduction
CrystFELdata scaling
MR-Rosettaphasing

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2020-02-26
    Type: Initial release
  • Version 1.1: 2020-03-18
    Changes: Database references
  • Version 1.2: 2020-05-20
    Changes: Database references
  • Version 1.3: 2023-10-11
    Changes: Data collection, Database references, Refinement description