Download MendeleyCrystal Structure of Seryl-tRNA synthetase (SerRS) from Cryptosporidium parvum complexed with L-Serylsulfamoyl Adenosine
Dranow, D.M., Abendroth, J., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.To be published.
6OTE
Crystal Structure of Seryl-tRNA synthetase (SerRS) from Cryptosporidium parvum complexed with L-Serylsulfamoyl Adenosine
- PDB DOI: https://doi.org/10.2210/pdb6OTE/pdb
- Classification: LIGASE
- Organism(s): Cryptosporidium parvum Iowa II
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2019-05-03 Released: 2019-05-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.95 Å
- R-Value Free: 0.253
- R-Value Work: 0.208
- R-Value Observed: 0.211
wwPDB Validation 3D Report Full Report
Currently 6OTE does not have a validation slider image.
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Seryl-tRNA synthetase, cytoplasmic | 572 | Cryptosporidium parvum Iowa II | Mutation(s): 0 Gene Names: cgd8_4720 |  | |
UniProt | |||||
Find proteins for Q5CVB3 (Cryptosporidium parvum (strain Iowa II)) Explore Q5CVB3 Go to UniProtKB: Q5CVB3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5CVB3 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SSA (Subject of Investigation/LOI) Query on SSA | B [auth A] | 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE C13 H19 N7 O8 S HQXFJGONGJPTLZ-YTMOPEAISA-N |  | ||
| MG Query on MG | C [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.95 Å
- R-Value Free: 0.253
- R-Value Work: 0.208
- R-Value Observed: 0.211
- Space Group: I 41 2 2
- Diffraction Data: https://doi.org/10.18430/m36ote
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 92.21 | α = 90 |
| b = 92.21 | β = 90 |
| c = 257.18 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PDB_EXTRACT | data extraction |
| MoRDa | phasing |
Structure Validation
Currently 6OTE does not have a validation slider image.
Entry History
Deposition Data
- Released Date: 2019-05-15 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2019-05-15
Type: Initial release - Version 1.1: 2023-10-11
Changes: Data collection, Database references, Refinement description
