Download Mendeleybeta-lactamase SHV-11 from Klebsiella pneumoniae strain NTUH-K2044
Osipiuk, J., Welk, L., Endres, M., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)To be published.
6NFD
beta-lactamase SHV-11 from Klebsiella pneumoniae strain NTUH-K2044
- PDB DOI: https://doi.org/10.2210/pdb6NFD/pdb
- Classification: LIGASE
- Organism(s): Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2018-12-19 Released: 2018-12-26
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.17 Å
- R-Value Free: 0.135
- R-Value Work: 0.118
- R-Value Observed: 0.119
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| beta-lactamase SHV-11 | 268 | Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 | Mutation(s): 0 Gene Names: blaSHV-11 |  | |
UniProt | |||||
Find proteins for A0A4P1LYI7 (Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044) Explore A0A4P1LYI7 Go to UniProtKB: A0A4P1LYI7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A4P1LYI7 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | B [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| EDO Query on EDO | C [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.17 Å
- R-Value Free: 0.135
- R-Value Work: 0.118
- R-Value Observed: 0.119
- Space Group: C 2 2 21
- Diffraction Data: https://doi.org/10.18430/m36nfd
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 50.158 | α = 90 |
| b = 123.543 | β = 90 |
| c = 124.48 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-3000 | data scaling |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data reduction |
| HKL-3000 | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-12-26 Deposition Author(s): Osipiuk, J., Welk, L., Endres, M., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | HHSN272201200026C |
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | HHSN272201700060C |
Revision History (Full details and data files)
- Version 1.0: 2018-12-26
Type: Initial release - Version 1.1: 2019-12-18
Changes: Author supporting evidence - Version 1.2: 2023-10-11
Changes: Data collection, Database references, Refinement description - Version 1.3: 2023-11-15
Changes: Data collection
