6MYF

Crystal structure of free human Scribble PDZ1 domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.210 
  • R-Value Work: 0.171 
  • R-Value Observed: 0.173 

wwPDB Validation   3D Report Full Report

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This is version 1.4 of the entry. See complete history


Literature

SGEF forms a complex with Scribble and Dlg1 and regulates epithelial junctions and contractility.

Awadia, S.Huq, F.Arnold, T.R.Goicoechea, S.M.Sun, Y.J.Hou, T.Kreider-Letterman, G.Massimi, P.Banks, L.Fuentes, E.J.Miller, A.L.Garcia-Mata, R.

(2019) J Cell Biol 218: 2699-2725

  • DOI: https://doi.org/10.1083/jcb.201811114
  • Primary Citation of Related Structures:  
    6MYE, 6MYF

  • PubMed Abstract: 

    The canonical Scribble polarity complex is implicated in regulation of epithelial junctions and apical polarity. Here, we show that SGEF, a RhoG-specific GEF, forms a ternary complex with Scribble and Dlg1, two members of the Scribble complex. SGEF targets to apical junctions in a Scribble-dependent fashion and functions in the regulation of actomyosin-based contractility and barrier function at tight junctions as well as E-cadherin-mediated formation of adherens junctions. Surprisingly, SGEF does not control the establishment of polarity. However, in 3D cysts, SGEF regulates the formation of a single open lumen. Interestingly, SGEF's nucleotide exchange activity regulates the formation and maintenance of adherens junctions, and in cysts the number of lumens formed, whereas SGEF's scaffolding activity is critical for regulation of actomyosin contractility and lumen opening. We propose that SGEF plays a key role in coordinating junctional assembly and actomyosin contractility by bringing together Scribble and Dlg1 and targeting RhoG activation to cell-cell junctions.


  • Organizational Affiliation

    Department of Biological Sciences, The University of Toledo, Toledo, OH.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein scribble homolog95Homo sapiensMutation(s): 0 
Gene Names: SCRIBCRIB1KIAA0147LAP4SCRB1VARTUL
UniProt & NIH Common Fund Data Resources
Find proteins for Q14160 (Homo sapiens)
Explore Q14160 
Go to UniProtKB:  Q14160
PHAROS:  Q14160
GTEx:  ENSG00000180900 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ14160
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.210 
  • R-Value Work: 0.171 
  • R-Value Observed: 0.173 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 39.108α = 90
b = 42.824β = 90
c = 91.234γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
Blu-Icedata collection
REFMACrefinement
ARP/wARPmodel building
Cootmodel building
Aimlessdata scaling
XDSdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

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Currently 6MYF does not have a validation slider image.



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
American Heart AssociationUnited States15GRNT25740021

Revision History  (Full details and data files)

  • Version 1.0: 2019-04-10
    Type: Initial release
  • Version 1.1: 2019-07-17
    Changes: Data collection, Database references
  • Version 1.2: 2019-08-21
    Changes: Data collection, Database references
  • Version 1.3: 2019-10-23
    Changes: Data collection, Database references
  • Version 1.4: 2023-10-11
    Changes: Data collection, Database references, Refinement description