6EVJ

Crystal structure of bat influenza A/H17N10 polymerase with viral RNA promoter and capped RNA primer


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.9 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.207

Literature

Macromolecules
Sequence Display for 6EVJ

Classification: VIRAL PROTEIN

Total Structure Weight: 559064.88


Macromolecule Entities
Molecule Chains Length Organism Details
Polymerase acidic protein A, D 738 Influenza a virus Details: N-terminal His-tag and linker C-terminal linker and TEV cleavage site
Gene Name(s): PA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RNA-directed RNA polymerase catalytic subunit B, E 776 Influenza a virus EC#: 2.7.7.48 IUBMB
Details: N-terminal linker C-terminal linker and TEV cleavage site
Gene Name(s): PB1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Polymerase basic protein 2 C, F 809 Influenza a virus Details: N-terminal linker C-terminal linker, STREP tag and TEV cleavage site
Gene Name(s): PB2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-D(*(GDM))-R(P*AP*AP*U)-3') M, N 13 Unidentified Synthetic capped RNA 12-mer
RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*U)-3') R, S 18 Influenza a virus Viral RNA promoter 3 primed end
RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*GP*G)-3') U, V 16 Influenza a virus Viral RNA promoter 5 primed end

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
8NK
Query on 8NK
M, N NON-POLYMER C11 H18 N5 O11 P2 --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.9 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.207
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 185.46 α = 90.00
b = 286.17 β = 93.27
c = 171.93 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-11-01
  • Released Date: 2017-12-13
  • Deposition author(s): Pflug, A., Cusack, S.

Revision History

  • Version 1_0: 2017-12-13

    Type: Initial release