Download MendeleyGlycan-induced oligomerization of a lectin from Mytilus californianus
Garcia-Maldonado, E., Medina-Romero, Y., Macias-Rubalcava, M.L., Hernandez-Santoyo, A.To be published.
6BFM
Galactose-binding Lectin from Mytilus californianus, Isoform1
- PDB DOI: https://doi.org/10.2210/pdb6BFM/pdb
- Classification: SUGAR BINDING PROTEIN
- Organism(s): Mytilus californianus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2017-10-26 Released: 2019-01-30
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.49 Å
- R-Value Free: 0.191
- R-Value Work: 0.155
- R-Value Observed: 0.157
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Lectin | 151 | Mytilus californianus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for A0A0P0E482 (Mytilus californianus) Explore A0A0P0E482 Go to UniProtKB: A0A0P0E482 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0P0E482 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PEG Query on PEG | H [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| GOL Query on GOL | C [auth A] D [auth A] E [auth A] F [auth A] I [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | G [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.49 Å
- R-Value Free: 0.191
- R-Value Work: 0.155
- R-Value Observed: 0.157
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 56.96 | α = 90 |
| b = 41.036 | β = 106.55 |
| c = 66.224 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2019-01-30 Deposition Author(s): Hernandez-Santoyo, A., Garcia-Maldonado, E.
Revision History (Full details and data files)
- Version 1.0: 2019-01-30
Type: Initial release - Version 1.1: 2019-02-13
Changes: Data collection, Source and taxonomy - Version 1.2: 2023-10-04
Changes: Data collection, Database references, Refinement description
