6BBO

Crystal structure of human APOBEC3H/RNA complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.43 Å
  • R-Value Free: 0.392
  • R-Value Work: 0.364

Literature

Macromolecules
Sequence Display for 6BBO

Classification: HYDROLASE / RNA

Total Structure Weight: 102860.70


Macromolecule Entities
Molecule Chains Length Organism Details
APOBEC3H A, E 180 Homo sapiens Mutation: K52E, E56A
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
MCherry fluorescent protein D, H 219 Discosoma sp. Gene Name(s): mCherry
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*UP*AP*AP*AP*AP*AP*AP*A)-3') B, F 8 Escherichia coli
RNA (5'-R(*UP*UP*UP*UP*UP*UP*UP*U)-3') C, G 8 Escherichia coli

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, E GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, E ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.43 Å
  • R-Value Free: 0.392
  • R-Value Work: 0.364
  • Space Group: P 31 1 2

Unit Cell:

Length (Å) Angle (°)
a = 101.29 α = 90.00
b = 101.29 β = 90.00
c = 211.22 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-10-19
  • Released Date: 2018-01-10
  • Deposition author(s): Shaban, N.M., Shi, K., Banerjee, S., Harris, R.S., Aihara, H.

Revision History

  • Version 1_0: 2018-01-10

    Type: Initial release

  • Version 1_1: 2018-01-17

    Type: Database references