6B0P

Zinc finger Domain of WT1(-KTS form) with 12+1mer Oligonucleotide with 3' Triplet GGT


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 6B0P

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 45791.60


Macromolecule Entities
Molecule Chains Length Organism Details
Wilms tumor protein A, D 119 Homo sapiens Fragment: UNP residues 304-420
Gene Name(s): WT1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(P*GP*CP*GP*TP*GP*GP*GP*AP*GP*GP*GP*T)-3') B, E 13 Homo sapiens
DNA (5'-D(P*AP*CP*CP*CP*TP*CP*CP*CP*AP*CP*GP*C)-3') C, F 13 Homo sapiens

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, C 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.188
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 75.80 α = 90.00
b = 84.40 β = 90.00
c = 85.97 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-09-14
  • Released Date: 2018-01-03
  • Deposition author(s): Horton, J.R., Cheng, X.

Revision History

  • Version 1_0: 2018-01-03

    Type: Initial release

  • Version 1_1: 2018-01-17

    Type: Database references