6ASD

Zinc finger region of human TET1 in complex with CpG DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.202

Literature

Macromolecules
Sequence Display for 6ASD

Classification: DNA BINDING PROTEIN / DNA

Total Structure Weight: 12964.15


Macromolecule Entities
Molecule Chains Length Organism Details
Methylcytosine dioxygenase TET1 C 47 Homo sapiens EC#: 1.14.11 IUBMB
Fragment: Zinc finger region (UNP residues 587-632)
Gene Name(s): TET1 Gene View CXXC6 KIAA1676 LCX
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*CP*CP*AP*CP*CP*GP*GP*TP*GP*GP*C)-3') A, B 12 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

C ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
UNX
Query on UNX

A, B, C UNKNOWN ATOM OR ION
X
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 73.50 α = 90.00
b = 31.95 β = 121.82
c = 65.41 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-08-24
  • Released Date: 2017-10-18
  • Deposition author(s): Liu, K., Xu, C., Tempel, W., Walker, J.R., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

Revision History

  • Version 1_0: 2017-10-18

    Type: Initial release