6AON

1.72 Angstrom Resolution Crystal Structure of 2-Oxoglutarate Dehydrogenase Complex Subunit Dihydrolipoamide Dehydrogenase from Bordetella pertussis in Complex with FAD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.72 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.169

Literature

Macromolecules
Sequence Display for 6AON

Classification: OXIDOREDUCTASE

Total Structure Weight: 102484.29

Macromolecule Entities
Molecule Chains Length Organism Details
Dihydrolipoyl dehydrogenase A, B 478 Bordetella pertussis EC#: 1.8.1.4 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.72 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.169
  • Space Group: P 41

Unit Cell:

Length (Å) Angle (°)
a = 68.80 α = 90.00
b = 68.80 β = 90.00
c = 199.40 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-08-16
  • Released Date: 2017-08-23
  • Deposition author(s): Minasov, G., Wawrzak, Z., Skarina, T., McChesney, C., Grimshaw, S., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • 2017-08-30
    Type: Database references, Structure summary