6ALS

Solution structure of a DNA dodecamer with 5-methylcytosine at the 3rd and 9th position and 8-oxoguanine at the 4th position


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 18
  • Conformers Submitted: 11
  • Selection Criteria: Structures with the Lowest Energy

Literature

Macromolecules
Sequence Display for 6ALS

Classification: DNA

Total Structure Weight: 7254.93

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*(DC5)P*GP*(DMC)P*(8OG)P*AP*AP*TP*TP*(DMC)P*GP*CP*(DG3))-3') A, B 12 Synthetic construct

Small Molecules
Modified Residues 3 Unique
ID Chains Type Formula 2D Diagram Parent
DCZ
Query on DCZ
A, B DNA OH 5 prime terminus C9 H13 N3 O4 --
5CM
Query on 5CM
A, B DNA LINKING C10 H16 N3 O7 P DC
8OG
Query on 8OG
A, B DNA LINKING C10 H14 N5 O8 P DG

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 18
  • Conformers Submitted: 11
  • Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-08-08
  • Released Date: 2017-09-06
  • Deposition author(s): Gruber, D.R., Shernyukov, A.V., Endutkin, A.V., Bagryanskaya, E.G., Zharkov, D.O., Smirnov, S.L.

Revision History

  • Version 1_0: 2017-09-06

    Type: Initial release

  • Version 1_1: 2017-09-27

    Type: Author supporting evidence