5YR2

Structure of cpGFP66BPA

PDB DOI: https://doi.org/10.2210/pdb5YR2/pdb

Classification: FLUORESCENT PROTEIN
Organism(s): Aequorea victoria
Expression System: Escherichia coli BL21
Mutation(s): Yes

Deposited: 2017-11-08 Released: 2019-01-30
Deposition Author(s): Wang, L., Kang, F., Wang, J.
Funding Organization(s): Ministry of Education (China)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.215
R-Value Work: 0.168
R-Value Observed: 0.170

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure of cpGFP66BPA

Wang, L., Kang, F.

To be published.

Macromolecule Content

Total Structure Weight: 55.91 kDa
Atom Count: 4,228
Modelled Residue Count: 456
Deposited Residue Count: 494
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Green fluorescent protein	A, B	247	Aequorea victoria	Mutation(s): 5 Gene Names: gfp
UniProt
Find proteins for A0A059PIQ0 (Aequorea victoria) Explore A0A059PIQ0 Go to UniProtKB: A0A059PIQ0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A059PIQ0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
BF9 Query on BF9	A, B	L-PEPTIDE LINKING	C₂₂ H₂₁ N₃ O₅		THR, PHE, GLY

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.215
R-Value Work: 0.168
R-Value Observed: 0.170
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.64	α = 90
b = 63.709	β = 101.09
c = 69.159	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2019-01-30

Deposition Author(s):

Funding Organization	Location	Grant Number
Ministry of Education (China)	China	2017YFA0503704

Revision History (Full details and data files)

Version 1.0: 2019-01-30
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.