5MQW

High-speed fixed-target serial virus crystallography


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.146 
  • R-Value Work: 0.112 
  • R-Value Observed: 0.114 

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Ligand Structure Quality Assessment 


This is version 1.5 of the entry. See complete history


Literature

High-speed fixed-target serial virus crystallography.

Roedig, P.Ginn, H.M.Pakendorf, T.Sutton, G.Harlos, K.Walter, T.S.Meyer, J.Fischer, P.Duman, R.Vartiainen, I.Reime, B.Warmer, M.Brewster, A.S.Young, I.D.Michels-Clark, T.Sauter, N.K.Kotecha, A.Kelly, J.Rowlands, D.J.Sikorsky, M.Nelson, S.Damiani, D.S.Alonso-Mori, R.Ren, J.Fry, E.E.David, C.Stuart, D.I.Wagner, A.Meents, A.

(2017) Nat Methods 14: 805-810

  • DOI: https://doi.org/10.1038/nmeth.4335
  • Primary Citation of Related Structures:  
    5MQW, 5OSN

  • PubMed Abstract: 

    We report a method for serial X-ray crystallography at X-ray free-electron lasers (XFELs), which allows for full use of the current 120-Hz repetition rate of the Linear Coherent Light Source (LCLS). Using a micropatterned silicon chip in combination with the high-speed Roadrunner goniometer for sample delivery, we were able to determine the crystal structures of the picornavirus bovine enterovirus 2 (BEV2) and the cytoplasmic polyhedrosis virus type 18 polyhedrin, with total data collection times of less than 14 and 10 min, respectively. Our method requires only micrograms of sample and should therefore broaden the applicability of serial femtosecond crystallography to challenging projects for which only limited sample amounts are available. By synchronizing the sample exchange to the XFEL repetition rate, our method allows for most efficient use of the limited beam time available at XFELs and should enable a substantial increase in sample throughput at these facilities.


  • Organizational Affiliation

    Photon Science, Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Polyhedrin248Operophtera brumata cypovirus 18Mutation(s): 1 
UniProt
Find proteins for Q30C70 (Operophtera brumata cypovirus 18)
Explore Q30C70 
Go to UniProtKB:  Q30C70
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ30C70
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.146 
  • R-Value Work: 0.112 
  • R-Value Observed: 0.114 
  • Space Group: I 2 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 102.8α = 90
b = 102.8β = 90
c = 102.8γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
cctbx.xfeldata reduction

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2017-06-21
    Type: Initial release
  • Version 1.1: 2017-06-28
    Changes: Database references
  • Version 1.2: 2017-08-09
    Changes: Database references
  • Version 1.3: 2018-01-24
    Changes: Data collection
  • Version 1.4: 2018-11-14
    Changes: Data collection
  • Version 1.5: 2024-01-17
    Changes: Data collection, Database references, Refinement description