5LQZ

Structure of F-ATPase from Pichia angusta, state1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.0 Å
  • Aggregation State: Particle
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 5LQZ

Classification: HYDROLASE

Total Structure Weight: 557705.44

Macromolecule Entities
Molecule Chains Length Organism Details
ATP synthase subunit f 1 30 Ogataea angusta
ATP synthase subunit AAP1 2 25 Ogataea angusta
ATP synthase subunit a 3 17 Ogataea angusta Details: Helix 1 of subunit a
ATP synthase subunit b 4 27 Ogataea angusta
ATP synthase alpha subunit A, B, C 510 Ogataea angusta Gene Name(s): HPODL_02577
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ATP synthase beta subunit D, E, F 476 Ogataea angusta EC#: 3.6.3.14 IUBMB
Gene Name(s): HPODL_01806
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ATP synthase gamma subunit G 269 Ogataea angusta Gene Name(s): HPODL_00669
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ATP synthase delta subunit H 138 Ogataea angusta Gene Name(s): HPODL_01793
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ATP synthase epsilon subunit I 63 Ogataea angusta
ATP synthase inhibitor protein IF1 J 66 Ogataea angusta EC#: 6.4.1.2 IUBMB
Gene Name(s): ATPIF1 Gene View ATPI
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ATP synthase subunit c K, L, M..., N, O, P, Q, R, S, TK, L, M, N, O, P, Q, R, S, T 76 Ogataea angusta Gene Name(s): atp9 HPOM_08
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ATP synthase OSCP subunit U 194 Ogataea angusta Gene Name(s): HPODL_04372
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ATP synthase subunit b V 204 Ogataea angusta Gene Name(s): HPODL_02801
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ATP synthase subunit d W 155 Ogataea angusta Gene Name(s): HPODL_02723
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ATP synthase subunit h X 21 Ogataea angusta
ATP synthase subunit a Y 252 Ogataea angusta Details: Helices 4, 5 and 6 of subunit a
Gene Name(s): atp6 HPOM_13
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ATP synthase subunit a Z 44 Ogataea angusta Details: Helices 2 and 3 of subunit a

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: F-type ATPase

Protein Name: ATP synthase (F-ATPase), State 1


Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ADP
Query on ADP

B, C, D, E, F ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D, F MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
UNK
Query on UNK
1, 2, 3, 4, W, X, Z L-PEPTIDE LINKING C4 H9 N O2 --

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.0 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-08-17
  • Released Date: 2016-11-16
  • Deposition author(s): Vinothkumar, K.R., Montgomery, M.G., Liu, S., Walker, J.E.

Revision History

  • Version 1_0: 2016-11-16

    Type: Initial release

  • Version 1_1: 2017-08-02

    Type: Data collection, Experimental preparation