5L0R

human POGLUT1 in complex with Notch1 EGF12 and UDP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.171
  • R-Value Work: 0.149

Literature

Macromolecules
Sequence Display for 5L0R

Classification: TRANSFERASE

Total Structure Weight: 47616.27

Macromolecule Entities
Molecule Chains Length Organism Details
Protein O-glucosyltransferase 1 A 357 Homo sapiens EC#: 2.4.1 IUBMB
Gene Name(s): POGLUT1 Gene View C3orf9 CLP46 KTELC1 MDSRP MDS010 UNQ490/PRO1006
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Neurogenic locus notch homolog protein 1 B 42 Homo sapiens Gene Name(s): NOTCH1 Gene View TAN1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UDP
Query on UDP

A URIDINE-5'-DIPHOSPHATE
C9 H14 N2 O12 P2
XCCTYIAWTASOJW-XVFCMESISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.171
  • R-Value Work: 0.149
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 70.58 α = 90.00
b = 73.56 β = 90.00
c = 83.28 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-07-28
  • Released Date: 2017-08-09
  • Deposition author(s): Li, Z., Rini, J.M.

Revision History

  • Version 1_0: 2017-08-09

    Type: Initial release

  • Version 1_1: 2017-08-30

    Type: Database references