5KS9

Bel502-DQ8-glia-alpha1 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 5KS9

Classification: IMMUNE SYSTEM

Total Structure Weight: 200962.33

Macromolecule Entities
Molecule Chains Length Organism Details
HLA class II histocompatibility antigen, DQ alpha 1 chain A, C 192 Homo sapiens Gene Name(s): HLA-DQA1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
HLA class II histocompatibility antigen, DQ beta 1 chain B, D 230 Triticum aestivum Homo sapiens Gene Name(s): HLA-DQB1 Gene View gli-2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Bel502 TCR alpha TRAV20*01 E, G 207 Homo sapiens Gene Name(s): TRAV20 TRAC TCRA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Bel502 TCR beta TRBV9*01 F, H 242 Homo sapiens Gene Name(s): TCRBV1S1A1N1 TRBV9 TRBC2 TCRBC2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DQ8-glia-alpha1 peptide I, J 16 Triticum aestivum Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B, C, D N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, C, E, G CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.199
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 74.56 α = 90.00
b = 56.87 β = 92.77
c = 232.05 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-07-08
  • Released Date: 2016-09-21
  • Deposition author(s): Petersen, J., Rossjohn, J., Reid, H.H.

Revision History

  • 2016-10-19
    Type: Database references