5KE2

Crystal structure of SETDB1 Tudor domain in complex with inhibitor XST06472A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.56 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.191

Literature

Macromolecules
Sequence Display for 5KE2

Classification: TRANSCRIPTION

Total Structure Weight: 25820.59

Macromolecule Entities
Molecule Chains Length Organism Details
Histone-lysine N-methyltransferase SETDB1 A 213 Homo sapiens EC#: 2.1.1.43 IUBMB
Gene Name(s): SETDB1 Gene View KIAA0067 KMT1E
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
6S4
Query on 6S4

A (3~{S})-~{N}-~{tert}-butyl-1,2,3,4-tetrahydroisoquinoline- 3-carboxamide
C14 H20 N2 O
DMJXRYSGXCLCFP-LBPRGKRZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
UNX
Query on UNX

A UNKNOWN ATOM OR ION
X
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 54.82 α = 90.00
b = 63.89 β = 90.00
c = 69.79 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-06-09
  • Released Date: 2016-07-13
  • Deposition author(s): Dong, A., Iqbal, A., Mader, P., Dobrovetsky, E., Walker, J.R., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Brown, P.J., Structural Genomics Consortium (SGC)

Revision History

  • Version 1_0: 2016-07-13

    Type: Initial release