5GJC

Zika virus NS3 helicase in complex with ATP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.197

Literature

Macromolecules
Sequence Display for 5GJC

Classification: HYDROLASE

Total Structure Weight: 50197.72

Macromolecule Entities
Molecule Chains Length Organism Details
NS3 helicase A 442 Zika virus Fragment: UNP residues 1682-2119
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.197
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 51.60 α = 90.00
b = 74.17 β = 92.21
c = 57.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-06-28
  • Released Date: 2016-07-20
  • Deposition author(s): Tian, H.L., Ji, X.Y., Yang, X.Y., Zhang, Z.X., Lu, Z.K., Yang, K.L., Chen, C., Zhao, Q., Chi, H., Mu, Z.Y., Xie, W., Wang, Z.F., Lou, H.Q., Yang, H.T., Rao, Z.H.

Revision History

  • Version 1_0: 2016-07-20

    Type: Initial release

  • Version 1_1: 2016-08-10

    Type: Database references

  • Version 1_2: 2016-08-31

    Type: Database references