5CWS

Crystal structure of the intact Chaetomium thermophilum Nsp1-Nup49-Nup57 channel nucleoporin heterotrimer bound to its Nic96 nuclear pore complex attachment site


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.77 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.229

Literature

Macromolecules
Sequence Display for 5CWS

Classification: PROTEIN TRANSPORT

Total Structure Weight: 277744.00

Macromolecule Entities
Molecule Chains Length Organism Details
sAB-158 Fab Light Chain A, G 237 Homo sapiens
sAB-158 Fab Heavy Chain B, H 266 Homo sapiens
Nucleoporin NSP1 C, I 208 Chaetomium thermophilum Fragment: UNP residues 467-674
Gene Name(s): NSP1 CTHT_0054390
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Nucleoporin NUP49 D, J 227 Chaetomium thermophilum Fragment: UNP residues 246-470
Gene Name(s): NUP49 CTHT_0031980
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Nucleoporin NUP57 E, K 247 Chaetomium thermophilum Fragment: UNP residues 74-319
Gene Name(s): NUP57 CTHT_0010940
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Nucleoporin NIC96 F, L 74 Chaetomium thermophilum Fragment: UNP residues 139-211
Gene Name(s): NIC96 CTHT_0008480
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OS
Query on OS

C, I OSMIUM ION
Os
XQBKHDFIPARBOX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.77 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.229
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 123.18 α = 90.00
b = 162.82 β = 90.00
c = 212.87 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-07-28
  • Released Date: 2015-10-14
  • Deposition author(s): Bley, C.J., Petrovic, S., Paduch, M., Lu, V., Kossiakoff, A.A., Hoelz, A.

Revision History

  • Version 1_0: 2015-10-14

    Type: Initial release

  • Version 1_1: 2016-07-27

    Type: Data collection

  • Version 1_2: 2017-09-13

    Type: Author supporting evidence, Derived calculations

  • Version 1_3: 2017-09-27

    Type: Data collection