5CMO

Crystal structure of holo-[acyl-carrier-protein] synthase (AcpS) from Neisseria meningitidis

• PDB DOI: https://doi.org/10.2210/pdb5CMO/pdb

• Classification: TRANSFERASE
• Organism(s): Neisseria meningitidis FAM18
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2015-07-17 Released: 2015-08-12 
• Deposition Author(s): Nanson, J.D., Forwood, J.K.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.222 
• R-Value Work: 0.195 
• R-Value Observed: 0.196 

Literature

Crystal structure of holo-[acyl-carrier-protein] synthase (AcpS) from Neisseria meningitidis

Nanson, J.D., Forwood, J.K.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 41.18 kDa 
• Atom Count: 3,169 
• Modelled Residue Count: 375 
• Deposited Residue Count: 375 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Holo-[acyl-carrier-protein] synthase	A, B, C	125	Neisseria meningitidis FAM18	Mutation(s): 0  Gene Names: acpS, NMC1700 EC: 2.7.8.7
UniProt
Find proteins for A1KVH5 (Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / DSM 15464 / FAM18)) Explore A1KVH5  Go to UniProtKB:  A1KVH5

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GOL	D [auth B]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.222 
• R-Value Work: 0.195 
• R-Value Observed: 0.196 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 48.064	α = 90
b = 90.073	β = 90
c = 93.045	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data scaling
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-08-12 
Deposition Author(s): Nanson, J.D., Forwood, J.K.

Revision History  

• Version 1.0: 2015-08-12
  Type: Initial release
  
• Version 1.1: 2017-11-22
  Changes: Data collection, Derived calculations, Refinement description
• Version 1.2: 2024-03-06
  Changes: Data collection, Database references