5AY2

Crystal structure of RNA duplex containing C-Ag(I)-C base pairs


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.189
  • R-Value Work: 0.174

Literature

Macromolecules
Sequence Display for 5AY2

Classification: RNA

Total Structure Weight: 15832.30

Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*GP*GP*AP*CP*UP*(CBR)P*GP*AP*CP*UP*CP*C)-3') A, B, C, D 12 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AG
Query on AG

A, C SILVER ION
Ag
FOIXSVOLVBLSDH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CBR
Query on CBR
A, B, C, D DNA LINKING C9 H13 Br N3 O7 P DC

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.189
  • R-Value Work: 0.174
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 29.48 α = 90.00
b = 46.86 β = 90.00
c = 89.94 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-08-06
  • Released Date: 2015-10-21
  • Deposition author(s): Kondo, J., Tada, Y., Dairaku, T., Saneyoshi, H., Okamoto, I., Tanaka, Y., Ono, A.

Revision History

  • 2015-11-11
    Type: Database references